9I5V Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9I5V_001 | 1/A/48:57 | No text annotation | ||
| HL_9I5V_002 | 1/A/76:84 | No text annotation | ||
| HL_9I5V_003 | 1/A/111:116 | No text annotation | geometric HL_8B0X_035 HL_82710.4 | |
| HL_9I5V_004 | 1/A/172:179 | No text annotation | geometric HL_9E6Q_006 HL_02262.1 | |
| HL_9I5V_005 | 1/A/224:230 | No text annotation | geometric HL_8B0X_040 HL_76371.4 | |
| HL_9I5V_006 | 1/A/323:330 | No text annotation | geometric HL_9E6Q_010 HL_13999.5 | |
| HL_9I5V_007 | 1/A/337:341 | No text annotation | geometric HL_8B0X_042 HL_75660.10 | |
| HL_9I5V_008 | 1/A/345:353 | No text annotation | geometric HL_8B0X_043 HL_27670.6 | |
| HL_9I5V_009 | 1/A/433:440 | No text annotation | geometric HL_8KEB_002 HL_97725.1 | |
| HL_9I5V_010 | 1/A/485:490 | No text annotation | geometric HL_8B0X_046 HL_34789.6 | |
| HL_9I5V_011 | 1/A/510:516 | GNRA | geometric HL_2XLK_001 HL_34789.6 | |
| HL_9I5V_012 | 1/A/588:597 | T-loop with 2 stacked bulged bases | geometric HL_8B0X_048 HL_33597.6 | |
| HL_9I5V_013 | 1/A/660:665 | No text annotation | geometric HL_8B0X_050 HL_34789.6 | |
| HL_9I5V_014 | 1/A/672:678 | No text annotation | geometric HL_8OI5_038 HL_34789.6 | |
| HL_9I5V_015 | 1/A/747:754 | No text annotation | geometric HL_8B0X_052 HL_98423.5 | |
| HL_9I5V_016 | 1/A/779:788 | No text annotation | geometric HL_4WF9_023 HL_50204.3 | |
| HL_9I5V_017 | 1/A/814:820 | No text annotation | geometric HL_8B0X_054 HL_79773.1 | |
| HL_9I5V_018 | 1/A/861:866 | No text annotation | geometric HL_8B0X_055 HL_27530.3 | |
| HL_9I5V_019 | 1/A/988:995 | GNRA | geometric HL_4WF9_027 HL_34789.6 | |
| HL_9I5V_020 | 1/A/1011:1018 | No text annotation | geometric HL_9E6Q_028 HL_47171.3 | |
| HL_9I5V_021 | 1/A/1250:1256 | No text annotation | ||
| HL_9I5V_022 | 1/A/1310:1318 | T-loop with 2 stacked bulged bases | geometric HL_4V9F_034 HL_33597.6 | |
| HL_9I5V_023 | 1/A/1353:1359 | No text annotation | geometric HL_8B0X_061 HL_49081.2 | |
| HL_9I5V_024 | 1/A/1392:1397 | GNRA variation | geometric HL_7A0S_034 HL_34789.6 | |
| HL_9I5V_025 | 1/A/1419:1428 | No text annotation | geometric HL_4V9F_037 HL_77449.3 | |
| HL_9I5V_026 | 1/A/1602:1605 | No text annotation | geometric HL_8B0X_067 HL_90436.5 | |
| HL_9I5V_027 | 1/A/1648:1655 | No text annotation | geometric HL_8B0X_068 HL_28592.4 | |
| HL_9I5V_028 | 1/A/1665:1673 | GNRA with extra cWW | geometric HL_4WF9_039 HL_87268.4 | |
| HL_9I5V_029 | 1/A/1727:1732 | No text annotation | geometric HL_8B0X_070 HL_61337.6 | |
| HL_9I5V_030 | 1/A/1761:1765 | No text annotation | geometric HL_4V9F_046 HL_80709.5 | |
| HL_9I5V_031 | 1/A/1786:1796 | No text annotation | geometric HL_8B0X_073 HL_87681.3 | |
| HL_9I5V_032 | 1/A/1815:1820 | No text annotation | geometric HL_9E6Q_056 HL_34789.6 | |
| HL_9I5V_033 | 1/A/1959:1967 | No text annotation | geometric HL_8B0X_077 HL_33350.1 | |
| HL_9I5V_034 | 1/A/2037:2046 | No text annotation | geometric HL_8B0X_078 HL_78372.3 | |
| HL_9I5V_035 | 1/A/2249:2257 | LSU P loop | geometric HL_8B0X_080 HL_11974.4 | |
| HL_9I5V_036 | 1/A/2265:2277 | No text annotation | geometric HL_8B0X_081 HL_02042.3 | |
| HL_9I5V_037 | 1/A/2325:2332 | Pseudoknot geometry | geometric HL_4WF9_052 HL_52651.4 | |
| HL_9I5V_038 | 1/A/2356:2363 | GNRA with extra cWW | geometric HL_4WF9_053 HL_87268.4 | |
| HL_9I5V_039 | 1/A/2375:2380 | No text annotation | geometric HL_9E6Q_056 HL_34789.6 | |
| HL_9I5V_040 | 1/A/2405:2414 | No text annotation | ||
| HL_9I5V_041 | 1/A/2529:2536 | GNRA variation | geometric HL_9DFE_059 HL_02262.1 | |
| HL_9I5V_042 | 1/A/2595:2600 | No text annotation | geometric HL_8GLP_010 HL_34789.6 | |
| HL_9I5V_043 | 1/A/2702:2707 | No text annotation | geometric HL_8OI5_062 HL_12125.4 | |
| HL_9I5V_044 | 1/A/2746:2760 | No text annotation | geometric HL_9E6Q_064 HL_53269.4 | |
| HL_9I5V_045 | 1/A/2805:2813 | No text annotation | geometric HL_9DFE_065 HL_37889.3 | |
| HL_9I5V_046 | 1/A/2842:2847 | No text annotation | geometric HL_8GLP_069 HL_34789.6 | |
| HL_9I5V_047 | 1/a/12:22 | No text annotation | geometric HL_8CRE_191 HL_73535.3 | |
| HL_9I5V_048 | 1/a/197:202 | No text annotation | ||
| HL_9I5V_049 | 1/a/264:272 | GNRA related | geometric HL_4LFB_006 HL_87268.4 | |
| HL_9I5V_050 | 1/a/301:306 | No text annotation | geometric HL_6MJ0_003 HL_34789.6 | |
| HL_9I5V_051 | 1/a/325:338 | No text annotation | ||
| HL_9I5V_052 | 1/a/384:389 | GNRA | geometric HL_9DID_001 HL_34789.6 | |
| HL_9I5V_053 | 1/a/519:524 | No text annotation | geometric HL_8B0X_099 HL_34789.6 | |
| HL_9I5V_054 | 1/a/617:623 | No text annotation | geometric HL_8B0X_013 HL_27656.1 | |
| HL_9I5V_055 | 1/a/689:698 | No text annotation | geometric HL_8B0X_014 HL_38491.4 | |
| HL_9I5V_056 | 1/a/726:731 | GNRA | geometric HL_8CRE_211 HL_34789.6 | |
| HL_9I5V_057 | 1/a/786:796 | No text annotation | geometric HL_8B0X_016 HL_38491.4 | |
| HL_9I5V_058 | 1/a/861:866 | GNRA | geometric HL_8CRE_214 HL_34789.6 | |
| HL_9I5V_059 | 1/a/896:901 | No text annotation | geometric HL_8GLP_107 HL_34789.6 | |
| HL_9I5V_060 | 1/a/962:971 | No text annotation | geometric HL_4LFB_021 HL_97521.3 | |
| HL_9I5V_061 | 1/a/1012:1017 | GNRA | geometric HL_9FN2_004 HL_34789.6 | |
| HL_9I5V_062 | 1/a/1073:1078 | GNRA | geometric HL_4YAZ_003 HL_34789.6 | |
| HL_9I5V_063 | 1/a/1263:1268 | No text annotation | geometric HL_9AXU_027 HL_34789.6 | |
| HL_9I5V_064 | 1/a/1311:1320 | T-loop with 3 stacked bulged bases | geometric HL_4LFB_029 HL_93658.1 | |
| HL_9I5V_065 | 1/a/1353:1364 | No text annotation | geometric HL_4LFB_030 HL_86432.3 | |
| HL_9I5V_066 | 1/a/1504:1509 | GNRA | geometric HL_4LFB_032 HL_34789.6 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9I5V_001 | 1/A/13:19, 1/A/533:539 | No text annotation | geometric IL_8B0X_065 IL_22311.3 | |
| IL_9I5V_002 | 1/A/25:26, 1/A/465:467 | No text annotation | geometric IL_8B0X_066 IL_14190.4 | |
| IL_9I5V_003 | 1/A/32:33, 1/A/457:459 | No text annotation | geometric IL_8B0X_067 IL_98469.1 | |
| IL_9I5V_004 | 1/A/70:74, 1/A/86:93 | Kink-turn | geometric IL_4WF9_004 IL_71972.2 | |
| IL_9I5V_005 | 1/A/120:124, 1/A/133:137 | Partly complementary | geometric IL_7VYX_004 IL_71154.5 | |
| IL_9I5V_006 | 1/A/161:162, 1/A/190:192 | Single stack bend | geometric IL_4V9F_005 IL_15011.5 | |
| IL_9I5V_007 | 1/A/166:172, 1/A/179:186 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_62167.5 | |
| IL_9I5V_008 | 1/A/217:223, 1/A/231:236 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_8B0X_071 IL_02666.3 | |
| IL_9I5V_009 | 1/A/252:255, 1/A/273:276 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_15225.4 | |
| IL_9I5V_010 | 1/A/310:313, 1/A/361:366 | No text annotation | ||
| IL_9I5V_011 | 1/A/319:321, 1/A/332:334 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.6 | |
| IL_9I5V_012 | 1/A/504:507, 1/A/519:532 | No text annotation | geometric IL_8B0X_075 IL_44923.3 | |
| IL_9I5V_013 | 1/A/559:563, 1/A/575:579 | No text annotation | geometric IL_8GLP_204 IL_87767.4 | |
| IL_9I5V_014 | 1/A/586:588, 1/A/597:599 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_01334.1 | |
| IL_9I5V_015 | 1/A/628:632, 1/A/649:653 | No text annotation | geometric IL_9DFE_014 IL_66798.3 | |
| IL_9I5V_016 | 1/A/707:709, 1/A/841:843 | No text annotation | geometric IL_8B0X_079 IL_01003.6 | |
| IL_9I5V_017 | 1/A/709:713, 1/A/834:841 | No text annotation | geometric IL_8B0X_080 IL_73855.3 | |
| IL_9I5V_018 | 1/A/732:733, 1/A/798:800 | No text annotation | geometric IL_8B0X_081 IL_14190.4 | |
| IL_9I5V_019 | 1/A/737:738, 1/A/763:765 | No text annotation | geometric IL_9E6Q_028 IL_28408.4 | |
| IL_9I5V_020 | 1/A/738:742, 1/A/759:763 | No text annotation | geometric IL_8B0X_083 IL_15190.4 | |
| IL_9I5V_021 | 1/A/773:776, 1/A/791:793 | No text annotation | geometric IL_8P9A_259 NA | |
| IL_9I5V_022 | 1/A/810:812, 1/A/822:826 | No text annotation | ||
| IL_9I5V_023 | 1/A/872:873, 1/A/973:975 | Single stack bend | geometric IL_7A0S_022 IL_15011.5 | |
| IL_9I5V_024 | 1/A/890:896, 1/A/949:955 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_8B0X_090 IL_94128.3 | |
| IL_9I5V_025 | 1/A/896:897, 1/A/947:949 | Minor groove platform | geometric IL_4V9F_034 IL_98469.1 | |
| IL_9I5V_026 | 1/A/898:903, 1/A/943:946 | No text annotation | geometric IL_8B0X_092 IL_16301.3 | |
| IL_9I5V_027 | 1/A/904:907, 1/A/939:942 | No text annotation | geometric IL_8GLP_166 IL_15225.4 | |
| IL_9I5V_028 | 1/A/1027:1029, 1/A/1194:1195 | No text annotation | geometric IL_8B0X_096 IL_05642.5 | |
| IL_9I5V_029 | 1/A/1031:1035, 1/A/1188:1192 | No text annotation | geometric IL_8B0X_097 IL_08938.3 | |
| IL_9I5V_030 | 1/A/1037:1044, 1/A/1185:1186 | No text annotation | geometric IL_8B0X_098 IL_46868.2 | |
| IL_9I5V_031 | 1/A/1044:1046, 1/A/1184:1185 | No text annotation | geometric IL_8B0X_099 IL_97561.7 | |
| IL_9I5V_032 | 1/A/1051:1057, 1/A/1175:1179 | Kink-turn related | geometric IL_8B0X_100 IL_57188.6 | |
| IL_9I5V_033 | 1/A/1066:1069, 1/A/1157:1159 | No text annotation | geometric IL_9AXU_061 IL_75527.4 | |
| IL_9I5V_034 | 1/A/1225:1227, 1/A/1276:1279 | Isolated cWS basepair | geometric IL_4WF9_044 IL_84227.1 | |
| IL_9I5V_035 | 1/A/1232:1235, 1/A/1268:1271 | Tandem non-canonical cWW pairs | geometric IL_4WF9_110 IL_39691.1 | |
| IL_9I5V_036 | 1/A/1236:1243, 1/A/1263:1267 | Kink-turn | geometric IL_4V9F_048 IL_90775.3 | |
| IL_9I5V_037 | 1/A/1291:1298, 1/A/2021:2027 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4WF9_048 IL_62167.5 | |
| IL_9I5V_038 | 1/A/1339:1342, 1/A/1639:1640 | No text annotation | geometric IL_8B0X_109 IL_74641.4 | |
| IL_9I5V_039 | 1/A/1348:1352, 1/A/1360:1362 | No text annotation | geometric IL_8B0X_110 IL_63596.14 | |
| IL_9I5V_040 | 1/A/1380:1384, 1/A/1405:1409 | No text annotation | geometric IL_8B0X_111 IL_89021.4 | |
| IL_9I5V_041 | 1/A/1436:1439, 1/A/1629:1632 | No text annotation | geometric IL_4X4T_003 IL_39691.1 | |
| IL_9I5V_042 | 1/A/1687:1692, 1/A/2014:2016 | No text annotation | geometric IL_8B0X_123 IL_12566.6 | |
| IL_9I5V_043 | 1/A/1699:1701, 1/A/2005:2007 | No text annotation | geometric IL_8B0X_124 IL_10432.3 | |
| IL_9I5V_044 | 1/A/1702:1705, 1/A/2003:2004 | No text annotation | geometric IL_8B0X_125 IL_74641.4 | |
| IL_9I5V_045 | 1/A/1702:1710, 1/A/2000:2004 | No text annotation | geometric IL_8B0X_180 IL_80252.3 | |
| IL_9I5V_046 | 1/A/1705:1710, 1/A/2000:2003 | No text annotation | geometric IL_8B0X_126 IL_28217.3 | |
| IL_9I5V_047 | 1/A/1722:1727, 1/A/1732:1738 | No text annotation | geometric IL_8GLP_108 IL_20700.3 | |
| IL_9I5V_048 | 1/A/1779:1780, 1/A/1990:1992 | No text annotation | geometric IL_8B0X_131 IL_14190.4 | |
| IL_9I5V_049 | 1/A/1807:1813, 1/A/1822:1830 | No text annotation | ||
| IL_9I5V_050 | 1/A/1846:1849, 1/A/1912:1913 | No text annotation | geometric IL_8B0X_133 IL_55206.3 | |
| IL_9I5V_051 | 1/A/1850:1851, 1/A/1908:1911 | No text annotation | geometric IL_8B0X_134 IL_71421.5 | |
| IL_9I5V_052 | 1/A/1943:1944, 1/A/1974:1977 | No text annotation | geometric IL_8B0X_137 IL_24886.4 | |
| IL_9I5V_053 | 1/A/1944:1955, 1/A/1971:1974 | No text annotation | geometric IL_8B0X_138 IL_84014.3 | |
| IL_9I5V_054 | 1/A/2060:2062, 1/A/2618:2619 | Major groove platform | geometric IL_7A0S_073 IL_48076.10 | |
| IL_9I5V_055 | 1/A/2064:2066, 1/A/2613:2616 | No text annotation | geometric IL_4V9F_073 IL_80025.3 | |
| IL_9I5V_056 | 1/A/2077:2079, 1/A/2443:2444 | No text annotation | geometric IL_8B0X_182 IL_97561.7 | |
| IL_9I5V_057 | 1/A/2080:2081, 1/A/2439:2442 | No text annotation | geometric IL_8GLP_131 IL_98469.1 | |
| IL_9I5V_058 | 1/A/2091:2093, 1/A/2237:2240 | No text annotation | geometric IL_8B0X_144 IL_87316.4 | |
| IL_9I5V_059 | 1/A/2095:2097, 1/A/2233:2235 | No text annotation | geometric IL_8B0X_145 IL_71625.5 | |
| IL_9I5V_061 | 1/A/2302:2304, 1/A/2314:2316 | Isolated non-canonical cWW pair | geometric IL_8CRE_391 IL_01003.6 | |
| IL_9I5V_062 | 1/A/2350:2354, 1/A/2365:2369 | No text annotation | ||
| IL_9I5V_063 | 1/A/2454:2455, 1/A/2499:2501 | Single stack bend | geometric IL_4WF9_089 IL_15011.5 | |
| IL_9I5V_064 | 1/A/2455:2456, 1/A/2497:2499 | No text annotation | geometric IL_8B0X_184 IL_48076.10 | |
| IL_9I5V_065 | 1/A/2458:2460, 1/A/2494:2495 | Major groove platform | geometric IL_7A0S_085 IL_48076.10 | |
| IL_9I5V_066 | 1/A/2460:2462, 1/A/2490:2494 | No text annotation | geometric IL_8B0X_152 IL_36931.4 | |
| IL_9I5V_067 | 1/A/2467:2471, 1/A/2481:2485 | Double sheared with non-canonical cWW | geometric IL_4WF9_093 IL_87767.4 | |
| IL_9I5V_068 | 1/A/2508:2509, 1/A/2581:2583 | Major groove platform | geometric IL_4WF9_094 IL_46637.4 | |
| IL_9I5V_069 | 1/A/2511:2513, 1/A/2575:2579 | Isolated non-canonical cWW with bulges | geometric IL_9DFE_097 IL_30722.1 | |
| IL_9I5V_070 | 1/A/2513:2514, 1/A/2572:2575 | No text annotation | geometric IL_4WF9_096 IL_44609.4 | |
| IL_9I5V_071 | 1/A/2523:2525, 1/A/2540:2544 | No text annotation | geometric IL_8GLP_150 IL_09353.2 | |
| IL_9I5V_072 | 1/A/2592:2593, 1/A/2602:2604 | No text annotation | geometric IL_9AXU_106 IL_14190.4 | |
| IL_9I5V_073 | 1/A/2637:2641, 1/A/2775:2783 | tSH-tHS-tHW | geometric IL_4WF9_099 IL_04638.4 | |
| IL_9I5V_074 | 1/A/2653:2659, 1/A/2664:2669 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.6 | |
| IL_9I5V_075 | 1/A/2681:2685, 1/A/2726:2728 | C-loop | geometric IL_4WF9_101 IL_63596.14 | |
| IL_9I5V_076 | 1/A/2687:2692, 1/A/2719:2724 | No text annotation | geometric IL_9AXU_113 IL_74322.2 | |
| IL_9I5V_077 | 1/A/2696:2697, 1/A/2712:2715 | No text annotation | geometric IL_8B0X_164 IL_44609.4 | |
| IL_9I5V_078 | 1/A/2738:2743, 1/A/2763:2768 | UAA/GAN with extra cWW | geometric IL_7A0S_098 IL_91079.1 | |
| IL_9I5V_079 | 1/A/2824:2825, 1/A/2863:2865 | No text annotation | geometric IL_8B0X_168 IL_77710.2 | |
| IL_9I5V_080 | 1/A/2829:2831, 1/A/2856:2859 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.4 | |
| IL_9I5V_081 | 1/A/2833:2838, 1/A/2851:2854 | tHS double platform | geometric IL_4V9F_099 IL_48489.3 | |
| IL_9I5V_082 | 1/B/15:16, 1/B/63:65 | No text annotation | geometric IL_9FN3_004 IL_28408.4 | |
| IL_9I5V_083 | 1/B/21:27, 1/B/53:58 | No text annotation | geometric IL_9E6Q_106 IL_41504.2 | |
| IL_9I5V_084 | 1/B/28:30, 1/B/48:52 | 8-nt loop receptor | geometric IL_6DME_002 IL_70784.2 | |
| IL_9I5V_085 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform | geometric IL_9AXU_128 IL_58103.14 | |
| IL_9I5V_086 | 1/B/69:77, 1/B/90:98 | Bacterial 5S Loop E | geometric IL_8B0X_175 IL_71138.1 | |
| IL_9I5V_087 | 1/a/30:32, 1/a/552:553 | No text annotation | geometric IL_8B0X_001 IL_28408.4 | |
| IL_9I5V_088 | 1/a/43:45, 1/a/401:404 | No text annotation | ||
| IL_9I5V_089 | 1/a/47:52, 1/a/364:366 | No text annotation | ||
| IL_9I5V_090 | 1/a/53:56, 1/a/361:363 | No text annotation | geometric IL_9M86_006 IL_32983.3 | |
| IL_9I5V_091 | 1/a/63:66, 1/a/105:106 | Major groove intercalation | geometric IL_4V9F_021 IL_71421.5 | |
| IL_9I5V_092 | 1/a/67:70, 1/a/100:104 | Decoding loop related | geometric IL_2O3V_002 IL_60988.4 | |
| IL_9I5V_093 | 1/a/131:134, 1/a/236:237 | Multiple bulged bases | geometric IL_4LFB_007 IL_16407.1 | |
| IL_9I5V_094 | 1/a/135:139, 1/a/232:235 | No text annotation | geometric IL_8B0X_010 IL_60988.4 | |
| IL_9I5V_095 | 1/a/147:149, 1/a/179:181 | Isolated cWH basepair | geometric IL_4WF9_045 IL_10892.4 | |
| IL_9I5V_096 | 1/a/150:157, 1/a/170:178 | No text annotation | ||
| IL_9I5V_097 | 1/a/192:194, 1/a/205:207 | No text annotation | geometric IL_8GLP_227 IL_01003.6 | |
| IL_9I5V_098 | 1/a/247:252, 1/a/282:289 | Kink-turn with non-sequential stacking | geometric IL_4LFB_011 IL_46174.6 | |
| IL_9I5V_099 | 1/a/254:257, 1/a/279:280 | No text annotation | geometric IL_4LFB_012 IL_22002.1 | |
| IL_9I5V_100 | 1/a/297:299, 1/a/308:313 | No text annotation | ||
| IL_9I5V_101 | 1/a/372:374, 1/a/397:398 | Single bulged U | geometric IL_3D2V_001 IL_97561.7 | |
| IL_9I5V_102 | 1/a/376:380, 1/a/394:395 | No text annotation | geometric IL_8B0X_017 IL_26900.3 | |
| IL_9I5V_103 | 1/a/380:381, 1/a/392:394 | No text annotation | geometric IL_8B0X_018 IL_28408.4 | |
| IL_9I5V_104 | 1/a/444:448, 1/a/487:494 | No text annotation | ||
| IL_9I5V_105 | 1/a/450:454, 1/a/480:485 | tWW-tWH-tHS | geometric IL_8B0X_021 IL_82100.1 | |
| IL_9I5V_106 | 1/a/499:501, 1/a/541:543 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10892.4 | |
| IL_9I5V_107 | 1/a/501:511, 1/a/537:541 | No text annotation | ||
| IL_9I5V_108 | 1/a/569:575, 1/a/879:880 | No text annotation | geometric IL_8B0X_025 IL_20847.3 | |
| IL_9I5V_109 | 1/a/580:584, 1/a/757:761 | tSH-tWH-tHS | geometric IL_8CRE_438 IL_05821.3 | |
| IL_9I5V_110 | 1/a/594:596, 1/a/644:645 | No text annotation | geometric IL_8B0X_027 IL_48076.10 | |
| IL_9I5V_111 | 1/a/597:598, 1/a/640:643 | Major groove minor groove platform; mini C-loop | geometric IL_1S03_003 IL_73108.4 | |
| IL_9I5V_112 | 1/a/654:655, 1/a/751:754 | No text annotation | geometric IL_8B0X_030 IL_74641.4 | |
| IL_9I5V_113 | 1/a/657:659, 1/a/746:749 | No text annotation | geometric IL_8CRE_441 IL_10892.4 | |
| IL_9I5V_114 | 1/a/663:666, 1/a/740:742 | Isolated non-canonical cWW pair | geometric IL_5T3K_001 IL_01003.6 | |
| IL_9I5V_115 | 1/a/673:677, 1/a/713:717 | Triple non-canonical cWW pairs | geometric IL_4LFB_065 IL_71154.5 | |
| IL_9I5V_116 | 1/a/684:688, 1/a/699:706 | Kink-turn | geometric IL_8B0X_034 IL_71972.2 | |
| IL_9I5V_117 | 1/a/774:779, 1/a/803:805 | No text annotation | geometric IL_8GLP_241 IL_31690.1 | |
| IL_9I5V_118 | 1/a/779:783, 1/a/799:803 | No text annotation | geometric IL_8B0X_036 IL_05821.3 | |
| IL_9I5V_119 | 1/a/886:893, 1/a/904:909 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4LFB_034 IL_84044.3 | |
| IL_9I5V_120 | 1/a/921:922, 1/a/1391:1393 | No text annotation | geometric IL_8B0X_038 IL_14190.4 | |
| IL_9I5V_121 | 1/a/924:926, 1/a/1388:1389 | No text annotation | geometric IL_8B0X_039 IL_28408.4 | |
| IL_9I5V_122 | 1/a/951:953, 1/a/1224:1227 | No text annotation | ||
| IL_9I5V_123 | 1/a/1045:1047, 1/a/1206:1207 | No text annotation | geometric IL_8B0X_044 IL_97561.7 | |
| IL_9I5V_124 | 1/a/1049:1053, 1/a/1202:1204 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.3 | |
| IL_9I5V_125 | 1/a/1054:1055, 1/a/1197:1201 | Minor groove platform | geometric IL_4LFB_045 IL_41261.1 | |
| IL_9I5V_126 | 1/a/1057:1058, 1/a/1193:1195 | No text annotation | geometric IL_8B0X_048 IL_14190.4 | |
| IL_9I5V_127 | 1/a/1118:1125, 1/a/1140:1147 | No text annotation | ||
| IL_9I5V_128 | 1/a/1245:1251, 1/a/1282:1287 | No text annotation | geometric IL_8B0X_053 IL_12056.1 | |
| IL_9I5V_129 | 1/a/1253:1256, 1/a/1275:1280 | No text annotation | geometric IL_8B0X_054 IL_08849.1 | |
| IL_9I5V_130 | 1/a/1257:1260, 1/a/1271:1274 | Double sheared | geometric IL_4UYK_005 IL_58355.4 | |
| IL_9I5V_131 | 1/a/1300:1305, 1/a/1326:1331 | No text annotation | geometric IL_8B0X_056 IL_28265.1 | |
| IL_9I5V_132 | 1/a/1397:1399, 1/a/1490:1493 | No text annotation | geometric IL_8GLP_274 IL_18228.3 | |
| IL_9I5V_133 | 1/a/1399:1402, 1/a/1486:1490 | No text annotation | geometric IL_8GLP_275 IL_25873.4 | |
| IL_9I5V_134 | 1/a/1403:1405, 1/a/1483:1485 | Isolated non-canonical cWW pair | geometric IL_8CRE_468 IL_01003.6 | |
| IL_9I5V_135 | 1/a/1405:1407, 1/a/1480:1483 | No text annotation | geometric IL_8B0X_178 IL_75527.4 | |
| IL_9I5V_136 | 1/a/1410:1412, 1/a/1475:1477 | No text annotation | geometric IL_8GLP_047 IL_10892.4 | |
| IL_9I5V_137 | 1/a/1414:1417, 1/a/1470:1473 | No text annotation | geometric IL_8GLP_279 IL_58355.4 | |
| IL_9I5V_138 | 1/a/1422:1425, 1/a/1462:1465 | No text annotation | geometric IL_4X4T_003 IL_39691.1 | |
| IL_9I5V_139 | 1/a/1429:1435, 1/a/1453:1458 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9I5V_060 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9I5V_001 | 1/A/19:20, 1/A/497:504, 1/A/532:533 | No text annotation | geometric J3_8B0X_014 J3_68715.3 | |
| J3_9I5V_002 | 1/A/19:20, 1/A/497:507, 1/A/519:533 | No text annotation | geometric J3_8B0X_032 J3_17917.3 | |
| J3_9I5V_003 | 1/A/21:24, 1/A/468:484, 1/A/491:496 | No text annotation | geometric J3_8GLP_024 J3_07616.3 | |
| J3_9I5V_004 | 1/A/45:46, 1/A/59:65, 1/A/98:102 | No text annotation | geometric J3_8B0X_015 J3_01004.3 | |
| J3_9I5V_005 | 1/A/315:319, 1/A/334:343, 1/A/355:359 | No text annotation | geometric J3_4WF9_015 J3_77124.1 | |
| J3_9I5V_006 | 1/A/733:735, 1/A/767:771, 1/A/795:798 | No text annotation | geometric J3_9E6Q_008 J3_69816.3 | |
| J3_9I5V_007 | 1/A/1327:1332, 1/A/1661:1663, 1/A/1675:1678 | No text annotation | geometric J3_7A0S_006 J3_32852.7 | |
| J3_9I5V_008 | 1/A/1335:1338, 1/A/1641:1647, 1/A/1656:1658 | No text annotation | geometric J3_9DFE_011 J3_47341.1 | |
| J3_9I5V_009 | 1/A/1373:1379, 1/A/1410:1416, 1/A/1431:1433 | No text annotation | ||
| J3_9I5V_010 | 1/A/1454:1459, 1/A/1601:1602, 1/A/1605:1611 | No text annotation | geometric J3_8B0X_035 J3_34864.3 | |
| J3_9I5V_011 | 1/A/2101:2103, 1/A/2206:2210, 1/A/2224:2229 | No text annotation | geometric J3_8B0X_021 J3_17460.1 | |
| J3_9I5V_012 | 1/A/2283:2285, 1/A/2385:2396, 1/A/2422:2428 | No text annotation | ||
| J3_9I5V_013 | 1/A/2518:2521, 1/A/2546:2548, 1/A/2562:2568 | No text annotation | geometric J3_4WF9_009 J3_32601.6 | |
| J3_9I5V_014 | 1/A/2800:2801, 1/A/2817:2822, 1/A/2867:2871 | No text annotation | ||
| J3_9I5V_015 | 1/B/9:14, 1/B/66:68, 1/B/99:102 | No text annotation | ||
| J3_9I5V_016 | 1/a/46:47, 1/a/366:372, 1/a/398:400 | No text annotation | geometric J3_8B0X_001 J3_58657.3 | |
| J3_9I5V_017 | 1/a/46:52, 1/a/364:372, 1/a/398:400 | No text annotation | geometric J3_4LFB_014 J3_63856.3 | |
| J3_9I5V_018 | 1/a/586:588, 1/a/651:654, 1/a/754:755 | No text annotation | geometric J3_4LFB_011 J3_01633.3 | |
| J3_9I5V_019 | 1/a/586:588, 1/a/651:655, 1/a/751:755 | No text annotation | geometric J3_4LFB_015 J3_17385.7 | |
| J3_9I5V_020 | 1/a/826:829, 1/a/856:860, 1/a/867:873 | No text annotation | ||
| J3_9I5V_021 | 1/a/935:937, 1/a/1342:1347, 1/a/1370:1377 | No text annotation | ||
| J3_9I5V_022 | 1/a/942:945, 1/a/1233:1235, 1/a/1334:1337 | No text annotation | geometric J3_8CRE_079 J3_44359.3 | |
| J3_9I5V_023 | 1/a/954:961, 1/a/972:983, 1/a/1219:1223 | No text annotation | geometric J3_8B0X_007 J3_88451.3 | |
| J3_9I5V_024 | 1/a/1235:1239, 1/a/1293:1300, 1/a/1331:1334 | No text annotation | geometric J3_4LFB_009 J3_03192.3 | |
| J4_9I5V_001 | 1/A/315:319, 1/A/334:337, 1/A/341:343, 1/A/355:359 | No text annotation | ||
| J4_9I5V_002 | 1/A/1299:1305, 1/A/1323:1324, 1/A/1681:1684, 1/A/2019:2020 | No text annotation | ||
| J4_9I5V_003 | 1/A/1339:1343, 1/A/1367:1372, 1/A/1434:1435, 1/A/1633:1640 | No text annotation | ||
| J4_9I5V_004 | 1/A/1342:1343, 1/A/1367:1372, 1/A/1434:1435, 1/A/1633:1639 | No text annotation | ||
| J4_9I5V_005 | 1/A/1781:1785, 1/A/1797:1801, 1/A/1836:1839, 1/A/1985:1989 | No text annotation | ||
| J4_9I5V_006 | 1/A/2286:2290, 1/A/2344:2349, 1/A/2370:2373, 1/A/2382:2384 | No text annotation | ||
| J4_9I5V_007 | 1/A/2644:2647, 1/A/2675:2677, 1/A/2732:2737, 1/A/2769:2772 | No text annotation | ||
| J4_9I5V_008 | 1/a/117:124, 1/a/244:245, 1/a/291:294, 1/a/316:317 | No text annotation | ||
| J4_9I5V_009 | 1/a/145:147, 1/a/181:187, 1/a/212:217, 1/a/224:226 | No text annotation | ||
| J4_9I5V_010 | 1/a/575:577, 1/a/764:769, 1/a/810:821, 1/a/878:879 | No text annotation | ||
| J5_9I5V_001 | 1/A/554:556, 1/A/582:586, 1/A/599:601, 1/A/1290:1291, 1/A/2027:2028 | No text annotation | ||
| J5_9I5V_002 | 1/A/606:611, 1/A/703:706, 1/A/844:847, 1/A/1224:1225, 1/A/1279:1285 | No text annotation | ||
| J5_9I5V_003 | 1/A/1710:1718, 1/A/1742:1743, 1/A/1760:1761, 1/A/1765:1773, 1/A/1998:2000 | No text annotation | ||
| J5_9I5V_004 | 1/A/2067:2074, 1/A/2447:2454, 1/A/2501:2508, 1/A/2583:2589, 1/A/2607:2612 | No text annotation | ||
| J5_9I5V_005 | 1/A/2084:2087, 1/A/2244:2247, 1/A/2259:2260, 1/A/2282:2283, 1/A/2428:2436 | No text annotation | ||
| J5_9I5V_006 | 1/a/36:39, 1/a/408:423, 1/a/428:444, 1/a/494:499, 1/a/543:548 | No text annotation | ||
| J5_9I5V_007 | 1/a/36:39, 1/a/408:423, 1/a/428:448, 1/a/487:499, 1/a/543:548 | No text annotation | ||
| J5_9I5V_008 | 1/a/58:61, 1/a/108:115, 1/a/319:321, 1/a/342:344, 1/a/355:359 | No text annotation | ||
| J6_9I5V_001 | 1/A/34:35, 1/A/157:161, 1/A/192:202, 1/A/209:213, 1/A/240:244, 1/A/449:456 | No text annotation | ||
| J6_9I5V_002 | 1/A/2084:2087, 1/A/2244:2247, 1/A/2259:2260, 1/A/2282:2285, 1/A/2385:2396, 1/A/2422:2436 | No text annotation | ||
| J7_9I5V_001 | 1/A/852:857, 1/A/870:871, 1/A/976:979, 1/A/1004:1009, 1/A/1020:1024, 1/A/1198:1199, 1/A/1214:1219 | No text annotation |
Problematic loops
No problematic loops
Coloring options: