HL_9I5V_008

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUGAAAGCU

Length

9 nucleotides

Bulged bases

9I5V|1|A|G|347, 9I5V|1|A|A|348, 9I5V|1|A|A|349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_008 not in the Motif Atlas

Geometric match to HL_8B0X_043

Geometric discrepancy: 0.1184

The information below is about HL_8B0X_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.6

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9I5V|1|A|A|345
9I5V|1|A|U|346
9I5V|1|A|G|347
9I5V|1|A|A|348
9I5V|1|A|A|349
9I5V|1|A|A|350
9I5V|1|A|G|351
9I5V|1|A|C|352
9I5V|1|A|U|353

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4

Chain V

Large ribosomal subunit protein uL22

Chain X

Large ribosomal subunit protein uL24