HL_9I5V_011

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

9I5V|1|A|C|514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_011 not in the Motif Atlas

Geometric match to HL_2XLK_001

Geometric discrepancy: 0.1659

The information below is about HL_2XLK_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9I5V|1|A|C|510
9I5V|1|A|G|511
9I5V|1|A|A|512
9I5V|1|A|A|513
9I5V|1|A|C|514
9I5V|1|A|A|515
9I5V|1|A|G|516

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

Large ribosomal subunit protein uL22

Chain X

Large ribosomal subunit protein uL24