HL_9I5V_014

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAAAAG

Length

7 nucleotides

Bulged bases

9I5V|1|A|A|677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_014 not in the Motif Atlas

Geometric match to HL_8OI5_038

Geometric discrepancy: 0.2653

The information below is about HL_8OI5_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9I5V|1|A|U|672
9I5V|1|A|U|673
9I5V|1|A|A|674
9I5V|1|A|A|675
9I5V|1|A|A|676
9I5V|1|A|A|677
9I5V|1|A|G|678

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL33

Chain 7

Large ribosomal subunit protein bL35