HL_9I5V_015

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_015 not in the Motif Atlas

Geometric match to HL_8B0X_052

Geometric discrepancy: 0.1636

The information below is about HL_8B0X_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9I5V|1|A|G|747
9I5V|1|A|G|748
9I5V|1|A|U|749
9I5V|1|A|A|750
9I5V|1|A|A|751
9I5V|1|A|C|752
9I5V|1|A|A|753
9I5V|1|A|C|754

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain f

Small ribosomal subunit protein uS15