HL_9I5V_016
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CG(H2U)UGAAAAG
- Length
- 10 nucleotides
- Bulged bases
- 9I5V|1|A|U|782, 9I5V|1|A|A|786, 9I5V|1|A|A|787
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I5V_016 not in the Motif Atlas
- Geometric match to HL_4WF9_023
- Geometric discrepancy: 0.0996
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.3
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 12
Unit IDs
9I5V|1|A|C|779
9I5V|1|A|G|780
9I5V|1|A|H2U|781
9I5V|1|A|U|782
9I5V|1|A|G|783
9I5V|1|A|A|784
9I5V|1|A|A|785
9I5V|1|A|A|786
9I5V|1|A|A|787
9I5V|1|A|G|788
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL32
- Chain 6
- Large ribosomal subunit protein bL34
- Chain E
- Large ribosomal subunit protein uL3
- Chain V
- Large ribosomal subunit protein uL22
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