HL_9I5V_023

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUAAUC

Length

7 nucleotides

Bulged bases

9I5V|1|A|C|1354, 9I5V|1|A|U|1358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_023 not in the Motif Atlas

Geometric match to HL_8B0X_061

Geometric discrepancy: 0.1321

The information below is about HL_8B0X_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49081.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9I5V|1|A|G|1353
9I5V|1|A|C|1354
9I5V|1|A|U|1355
9I5V|1|A|A|1356
9I5V|1|A|A|1357
9I5V|1|A|U|1358
9I5V|1|A|C|1359

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL17

Chain V

Large ribosomal subunit protein uL22