HL_9I5V_025

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9I5V|1|A|U|1426, 9I5V|1|A|U|1427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_025 not in the Motif Atlas

Geometric match to HL_4V9F_037

Geometric discrepancy: 0.1031

The information below is about HL_4V9F_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.3

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9I5V|1|A|G|1419
9I5V|1|A|U|1420
9I5V|1|A|U|1421
9I5V|1|A|A|1422
9I5V|1|A|A|1423
9I5V|1|A|U|1424
9I5V|1|A|A|1425
9I5V|1|A|U|1426
9I5V|1|A|U|1427
9I5V|1|A|C|1428

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

Large ribosomal subunit protein uL23