HL_9I5V_029

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9I5V|1|A|U|1729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_029 not in the Motif Atlas

Geometric match to HL_8B0X_070

Geometric discrepancy: 0.0453

The information below is about HL_8B0X_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

9I5V|1|A|C|1727
9I5V|1|A|U|1728
9I5V|1|A|U|1729
9I5V|1|A|C|1730
9I5V|1|A|G|1731
9I5V|1|A|G|1732

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA