HL_9I5V_038

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_038 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.1703

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9I5V|1|A|C|2356
9I5V|1|A|A|2357
9I5V|1|A|A|2358
9I5V|1|A|A|2359
9I5V|1|A|C|2360
9I5V|1|A|A|2361
9I5V|1|A|A|2362
9I5V|1|A|G|2363

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain O

Large ribosomal subunit protein uL15

Chain Z

Large ribosomal subunit protein bL27