HL_9I5V_041

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGGAGAAG

Length

8 nucleotides

Bulged bases

9I5V|1|A|G|2530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_041 not in the Motif Atlas

Geometric match to HL_9DFE_059

Geometric discrepancy: 0.1364

The information below is about HL_9DFE_059

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9I5V|1|A|U|2529
9I5V|1|A|G|2530
9I5V|1|A|G|2531
9I5V|1|A|A|2532
9I5V|1|A|G|2533
9I5V|1|A|A|2534
9I5V|1|A|A|2535
9I5V|1|A|G|2536

Current chains

Chain A

23S rRNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL6

Chain 8

Large ribosomal subunit protein bL36