HL_9I5V_057

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

9I5V|1|a|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_057 not in the Motif Atlas

Geometric match to HL_8B0X_016

Geometric discrepancy: 0.0962

The information below is about HL_8B0X_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.4

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9I5V|1|a|G|786
9I5V|1|a|A|787
9I5V|1|a|U|788
9I5V|1|a|U|789
9I5V|1|a|A|790
9I5V|1|a|G|791
9I5V|1|a|A|792
9I5V|1|a|U|793
9I5V|1|a|A|794
9I5V|1|a|C|795
9I5V|1|a|C|796

Current chains

Chain a

16S rRNA

Nearby chains

Chain 14

Ribosome-associated translation inhibitor RaiA

Chain L

Small ribosomal subunit protein uS11