HL_9I5V_059

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_059 not in the Motif Atlas

Geometric match to HL_8GLP_107

Geometric discrepancy: 0.0618

The information below is about HL_8GLP_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9I5V|1|a|G|896
9I5V|1|a|G|897
9I5V|1|a|C|898
9I5V|1|a|A|899
9I5V|1|a|A|900
9I5V|1|a|C|901

Current chains

Chain a

16S rRNA

Nearby chains

Chain 10

AURKAIP1/COX24 domain-containing protein

Chain A

Large subunit ribosomal RNA; LSU rRNA