HL_9I5V_061

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_061 not in the Motif Atlas

Geometric match to HL_9FN2_004

Geometric discrepancy: 0.0837

The information below is about HL_9FN2_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9I5V|1|a|U|1012
9I5V|1|a|G|1013
9I5V|1|a|A|1014
9I5V|1|a|A|1015
9I5V|1|a|A|1016
9I5V|1|a|A|1017

Current chains

Chain a

16S rRNA

Nearby chains

Chain g

Small ribosomal subunit protein uS14

Chain p

Small ribosomal subunit protein uS19