HL_9I5V_062

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_062 not in the Motif Atlas

Geometric match to HL_4YAZ_003

Geometric discrepancy: 0.069

The information below is about HL_4YAZ_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9I5V|1|a|C|1073
9I5V|1|a|G|1074
9I5V|1|a|U|1075
9I5V|1|a|G|1076
9I5V|1|a|A|1077
9I5V|1|a|G|1078

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

Small ribosomal subunit protein uS5