HL_9I5V_063

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_063 not in the Motif Atlas

Geometric match to HL_9AXU_027

Geometric discrepancy: 0.0771

The information below is about HL_9AXU_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9I5V|1|a|G|1263
9I5V|1|a|G|1264
9I5V|1|a|C|1265
9I5V|1|a|G|1266
9I5V|1|a|A|1267
9I5V|1|a|C|1268

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

Small ribosomal subunit protein uS13

Chain p

Small ribosomal subunit protein uS19