HL_9I5V_064

3D structure

PDB id

9I5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S P. gingivalis ribosome erm-delta-porN strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I5V_064 not in the Motif Atlas

Geometric match to HL_4LFB_029

Geometric discrepancy: 0.0982

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9I5V|1|a|C|1311
9I5V|1|a|U|1312
9I5V|1|a|G|1313
9I5V|1|a|C|1314
9I5V|1|a|A|1315
9I5V|1|a|A|1316
9I5V|1|a|C|1317
9I5V|1|a|U|1318
9I5V|1|a|C|1319
9I5V|1|a|G|1320

Current chains

Chain a

16S rRNA

Nearby chains

Chain g

Small ribosomal subunit protein uS14

Chain i

Small ribosomal subunit protein uS13

Chain p

Small ribosomal subunit protein uS19