HL_9I5V_065
3D structure
- PDB id
- 9I5V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S P. gingivalis ribosome erm-delta-porN strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAUCAGCCAUGG
- Length
- 12 nucleotides
- Bulged bases
- 9I5V|1|a|C|1360, 9I5V|1|a|U|1362
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I5V_065 not in the Motif Atlas
- Geometric match to HL_4LFB_030
- Geometric discrepancy: 0.1592
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.3
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9I5V|1|a|C|1353
9I5V|1|a|A|1354
9I5V|1|a|U|1355
9I5V|1|a|C|1356
9I5V|1|a|A|1357
9I5V|1|a|G|1358
9I5V|1|a|C|1359
9I5V|1|a|C|1360
9I5V|1|a|A|1361
9I5V|1|a|U|1362
9I5V|1|a|G|1363
9I5V|1|a|G|1364
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain J
- Small ribosomal subunit protein uS9
- Chain K
- Small ribosomal subunit protein uS10
- Chain g
- Small ribosomal subunit protein uS14
- Chain i
- Small ribosomal subunit protein uS13
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