HL_9I78_008

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

9I78|1|L1|G|276, 9I78|1|L1|A|277, 9I78|1|L1|A|278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|U|271
9I78|1|L1|U|272
9I78|1|L1|U|273
9I78|1|L1|G|274
9I78|1|L1|G|275
9I78|1|L1|G|276
9I78|1|L1|A|277
9I78|1|L1|A|278
9I78|1|L1|U|279
9I78|1|L1|G|280

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LN

Ribosomal protein L15

Chain La

60S ribosomal protein L28-like protein

Chain Lo

60S ribosomal protein L44-like protein