RNA 3D Hub //

9I78 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9I78_0011/L1/39:46No text annotation
HL_9I78_0021/L1/70:75No text annotation
HL_9I78_0031/L1/91:97No text annotation
HL_9I78_0041/L1/130:135No text annotation
HL_9I78_0051/L1/188:195No text annotation
HL_9I78_0061/L1/202:206No text annotation
HL_9I78_0071/L1/210:218No text annotation
HL_9I78_0081/L1/271:280No text annotation
HL_9I78_0091/L1/296:305No text annotation
HL_9I78_0101/L1/350:355No text annotation
HL_9I78_0111/L1/375:380No text annotation
HL_9I78_0121/L1/456:461No text annotation
HL_9I78_0131/L1/534:539No text annotation
HL_9I78_0141/L1/589:593No text annotation
HL_9I78_0151/L1/628:637No text annotation
HL_9I78_0161/L1/674:682No text annotation
HL_9I78_0171/L1/695:700No text annotation
HL_9I78_0181/L1/717:722No text annotation
HL_9I78_0191/L1/745:750No text annotation
HL_9I78_0201/L1/826:831No text annotation
HL_9I78_0211/L1/858:867No text annotation
HL_9I78_0221/L1/892:900No text annotation
HL_9I78_0231/L1/940:945No text annotation
HL_9I78_0241/L1/1059:1066No text annotation
HL_9I78_0251/L1/1109:1115No text annotation
HL_9I78_0261/L1/1131:1138No text annotation
HL_9I78_0291/L1/1330:1340No text annotation
HL_9I78_0301/L1/1386:1391No text annotation
HL_9I78_0311/L1/1445:1453No text annotation
HL_9I78_0321/L1/1489:1495No text annotation
HL_9I78_0331/L1/1527:1532No text annotation
HL_9I78_0351/L1/1579:1588No text annotation
HL_9I78_0361/L1/1614:1619No text annotation
HL_9I78_0371/L1/1660:1668No text annotation
HL_9I78_0381/L1/1699:1705No text annotation
HL_9I78_0391/L1/1739:1746No text annotation
HL_9I78_0401/L1/1772:1776No text annotation
HL_9I78_0411/L1/1824:1831No text annotation
HL_9I78_0421/L1/1842:1848No text annotation
HL_9I78_0431/L1/1903:1908No text annotation
HL_9I78_0441/L1/2073:2077No text annotation
HL_9I78_0451/L1/2098:2108No text annotation
HL_9I78_0461/L1/2127:2133No text annotation
HL_9I78_0471/L1/2183:2188No text annotation
HL_9I78_0481/L1/2216:2226No text annotation
HL_9I78_0491/L1/2255:2263No text annotation
HL_9I78_0501/L1/2332:2341No text annotation
HL_9I78_0521/L1/2527:2533No text annotation
HL_9I78_0531/L1/2575:2583No text annotation
HL_9I78_0541/L1/2592:2604No text annotation
HL_9I78_0551/L1/2632:2640No text annotation
HL_9I78_0561/L1/2652:2659No text annotation
HL_9I78_0571/L1/2683:2691No text annotation
HL_9I78_0581/L1/2703:2708No text annotation
HL_9I78_0591/L1/2735:2743No text annotation
HL_9I78_0601/L1/2799:2807No text annotation
HL_9I78_0611/L1/2856:2863No text annotation
HL_9I78_0621/L1/2879:2885No text annotation
HL_9I78_0631/L1/2922:2927No text annotation
HL_9I78_0641/L1/2983:2988No text annotation
HL_9I78_0651/L1/3026:3031No text annotation
HL_9I78_0661/L1/3068:3082No text annotation
HL_9I78_0671/L1/3143:3148No text annotation
HL_9I78_0681/L1/3182:3190No text annotation
HL_9I78_0691/L1/3244:3252No text annotation
HL_9I78_0701/L1/3291:3294No text annotation
HL_9I78_0711/L2/47:56No text annotation
HL_9I78_0721/L2/108:114No text annotation
HL_9I78_0731/L2/124:129No text annotation
HL_9I78_0741/L3/32:45No text annotation
geometric
HL_9AXU_068
HL_01182.1
HL_9I78_0751/L3/36:41No text annotation
homologous
HL_7A0S_069
HL_59381.2
HL_9I78_0761/L3/87:92GNRA
homologous
HL_4V9F_072
HL_34789.3

Problematic loops

#loop idProblemSequence
HL_9I78_027No text annotation
HL_9I78_028No text annotation
HL_9I78_034No text annotation
HL_9I78_051No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9I78_0011/L1/8:9,
1/L2/150:152		No text annotation
IL_9I78_0021/L1/14:16,
1/L2/144:145		No text annotation
IL_9I78_0031/L1/28:29,
1/L1/57:59		No text annotation
IL_9I78_0041/L1/32:39,
1/L1/46:54		No text annotation
IL_9I78_0051/L1/83:90,
1/L1/98:104		No text annotation
IL_9I78_0061/L1/124:125,
1/L1/140:145		No text annotation
IL_9I78_0071/L1/126:128,
1/L1/137:139		No text annotation
IL_9I78_0081/L1/155:156,
1/L1/253:255		No text annotation
IL_9I78_0091/L1/158:160,
1/L1/250:251		No text annotation
IL_9I78_0101/L1/164:165,
1/L1/241:246		No text annotation
IL_9I78_0111/L1/168:171,
1/L1/235:238		No text annotation
IL_9I78_0121/L1/173:174,
1/L1/231:233		No text annotation
IL_9I78_0131/L1/176:179,
1/L1/226:229		No text annotation
IL_9I78_0141/L1/183:185,
1/L1/198:199		No text annotation
IL_9I78_0151/L1/330:332,
1/L2/25:26		No text annotation
IL_9I78_0161/L1/369:372,
1/L1/383:396		No text annotation
IL_9I78_0171/L1/397:403,
1/L2/13:19		No text annotation
IL_9I78_0181/L1/421:423,
1/L1/617:619		No text annotation
IL_9I78_0191/L1/435:437,
1/L1/481:483		No text annotation
IL_9I78_0201/L1/445:451,
1/L1/466:473		No text annotation
IL_9I78_0211/L1/508:517,
1/L1/557:565		No text annotation
IL_9I78_0221/L1/523:530,
1/L1/543:551		No text annotation
IL_9I78_0231/L1/658:660,
1/L1/772:774		No text annotation
IL_9I78_0241/L1/668:672,
1/L1/684:688		No text annotation
IL_9I78_0251/L1/713:716,
1/L1/723:727		No text annotation
IL_9I78_0261/L1/734:735,
1/L1/761:763		No text annotation
IL_9I78_0271/L1/737:739,
1/L1/756:759		No text annotation
IL_9I78_0281/L1/740:745,
1/L1/750:755		No text annotation
IL_9I78_0291/L1/785:787,
1/L1/920:922		No text annotation
IL_9I78_0301/L1/787:791,
1/L1/913:920		No text annotation
IL_9I78_0311/L1/815:816,
1/L1/841:843		No text annotation
IL_9I78_0321/L1/816:820,
1/L1/837:841		No text annotation
IL_9I78_0341/L1/851:854,
1/L1/870:872		No text annotation
IL_9I78_0351/L1/855:857,
1/L1/868:869		No text annotation
IL_9I78_0361/L1/889:891,
1/L1/901:905		No text annotation
IL_9I78_0371/L1/936:938,
1/L1/947:949		No text annotation
IL_9I78_0381/L1/951:952,
1/L1/1094:1096		No text annotation
IL_9I78_0391/L1/958:964,
1/L1/1084:1088		No text annotation
IL_9I78_0401/L1/965:967,
1/L1/1082:1083		No text annotation
IL_9I78_0411/L1/973:979,
1/L1/1035:1041		No text annotation
IL_9I78_0421/L1/979:980,
1/L1/1033:1035		No text annotation
IL_9I78_0431/L1/981:986,
1/L1/1029:1032		No text annotation
IL_9I78_0441/L1/988:991,
1/L1/1024:1027		No text annotation
IL_9I78_0451/L1/991:993,
1/L1/1022:1024		No text annotation
IL_9I78_0461/L1/994:999,
1/L1/1018:1021		No text annotation
IL_9I78_0481/L1/1052:1054,
1/L1/1070:1072		No text annotation
IL_9I78_0491/L1/1057:1059,
1/L1/1066:1067		No text annotation
IL_9I78_0501/L1/1103:1105,
1/L1/1119:1121		No text annotation
IL_9I78_0511/L1/1150:1154,
1/L1/1311:1315		No text annotation
IL_9I78_0521/L1/1156:1163,
1/L1/1308:1309		No text annotation
IL_9I78_0531/L1/1163:1165,
1/L1/1307:1308		No text annotation
IL_9I78_0541/L1/1170:1177,
1/L1/1297:1302		No text annotation
IL_9I78_0551/L1/1177:1188,
1/L1/1282:1297		No text annotation
IL_9I78_0561/L1/1190:1193,
1/L1/1277:1280		No text annotation
IL_9I78_0571/L1/1193:1209,
1/L1/1266:1277		No text annotation
IL_9I78_0591/L1/1359:1361,
1/L1/1411:1414		No text annotation
IL_9I78_0601/L1/1368:1370,
1/L1/1403:1404		No text annotation
IL_9I78_0611/L1/1371:1378,
1/L1/1398:1402		No text annotation
IL_9I78_0621/L1/1381:1383,
1/L1/1394:1395		No text annotation
IL_9I78_0631/L1/1427:1433,
1/L1/2317:2322		No text annotation
IL_9I78_0641/L1/1475:1478,
1/L1/1815:1816		No text annotation
IL_9I78_0651/L1/1484:1488,
1/L1/1496:1498		No text annotation
IL_9I78_0661/L1/1515:1519,
1/L1/1565:1570		No text annotation
IL_9I78_0671/L1/1598:1601,
1/L1/1804:1806		No text annotation
IL_9I78_0681/L1/1603:1604,
1/L1/1800:1802		No text annotation
IL_9I78_0691/L1/1625:1629,
1/L1/1786:1790		No text annotation
IL_9I78_0701/L1/1641:1643,
1/L1/1766:1768		No text annotation
IL_9I78_0711/L1/1649:1650,
1/L1/1758:1760		No text annotation
IL_9I78_0721/L1/1650:1651,
1/L1/1756:1758		No text annotation
IL_9I78_0731/L1/1655:1657,
1/L1/1671:1673		No text annotation
IL_9I78_0741/L1/1674:1678,
1/L1/1727:1732		No text annotation
IL_9I78_0751/L1/1682:1687,
1/L1/1717:1723		No text annotation
IL_9I78_0761/L1/1691:1697,
1/L1/1707:1713		No text annotation
IL_9I78_0771/L1/1863:1869,
1/L1/2309:2312		No text annotation
IL_9I78_0781/L1/1875:1877,
1/L1/2301:2303		No text annotation
IL_9I78_0791/L1/1878:1881,
1/L1/2299:2300		No text annotation
IL_9I78_0801/L1/1878:1886,
1/L1/2296:2300		No text annotation
IL_9I78_0811/L1/1881:1886,
1/L1/2296:2299		No text annotation
IL_9I78_0821/L1/1898:1903,
1/L1/1908:1914		No text annotation
IL_9I78_0831/L1/1920:1922,
1/L1/2069:2071		No text annotation
IL_9I78_0841/L1/1927:1928,
1/L1/2061:2064		No text annotation
IL_9I78_0851/L1/2091:2092,
1/L1/2286:2288		No text annotation
IL_9I78_0861/L1/2119:2124,
1/L1/2136:2143		No text annotation
IL_9I78_0871/L1/2159:2162,
1/L1/2208:2209		No text annotation
IL_9I78_0881/L1/2163:2164,
1/L1/2204:2207		No text annotation
IL_9I78_0891/L1/2167:2172,
1/L1/2199:2201		No text annotation
IL_9I78_0901/L1/2174:2180,
1/L1/2191:2197		No text annotation
IL_9I78_0911/L1/2239:2240,
1/L1/2270:2273		No text annotation
IL_9I78_0921/L1/2240:2251,
1/L1/2267:2270		No text annotation
IL_9I78_0931/L1/2354:2357,
1/L1/2945:2947		No text annotation
IL_9I78_0941/L1/2359:2361,
1/L1/2940:2943		No text annotation
IL_9I78_0951/L1/2372:2374,
1/L1/2770:2771		No text annotation
IL_9I78_0961/L1/2375:2376,
1/L1/2766:2769		No text annotation
IL_9I78_0971/L1/2386:2388,
1/L1/2563:2566		No text annotation
IL_9I78_0981/L1/2483:2489,
1/L1/2543:2546		No text annotation
IL_9I78_0991/L1/2573:2574,
1/L1/2584:2586		No text annotation
IL_9I78_1001/L1/2625:2627,
1/L1/2645:2649		No text annotation
IL_9I78_1011/L1/2673:2675,
1/L1/2699:2700		No text annotation
IL_9I78_1021/L1/2677:2680,
1/L1/2694:2697		No text annotation
IL_9I78_1031/L1/2729:2732,
1/L1/2746:2747		No text annotation
IL_9I78_1041/L1/2782:2783,
1/L1/2824:2826		No text annotation
IL_9I78_1051/L1/2783:2785,
1/L1/2822:2824		No text annotation
IL_9I78_1061/L1/2785:2787,
1/L1/2821:2822		No text annotation
IL_9I78_1071/L1/2787:2789,
1/L1/2817:2821		No text annotation
IL_9I78_1081/L1/2794:2798,
1/L1/2808:2812		No text annotation
IL_9I78_1091/L1/2835:2836,
1/L1/2908:2910		No text annotation
IL_9I78_1101/L1/2838:2840,
1/L1/2902:2906		No text annotation
IL_9I78_1111/L1/2840:2841,
1/L1/2899:2902		No text annotation
IL_9I78_1121/L1/2848:2850,
1/L1/2871:2873		No text annotation
IL_9I78_1131/L1/2848:2851,
1/L1/2868:2873		No text annotation
IL_9I78_1141/L1/2850:2851,
1/L1/2868:2871		No text annotation
IL_9I78_1151/L1/2877:2879,
1/L1/2885:2887		No text annotation
IL_9I78_1161/L1/2919:2920,
1/L1/2929:2931		No text annotation
IL_9I78_1171/L1/2962:2965,
1/L1/3097:3102		No text annotation
IL_9I78_1181/L1/2970:2972,
1/L1/2998:3000		No text annotation
IL_9I78_1191/L1/2976:2983,
1/L1/2988:2994		No text annotation
IL_9I78_1201/L1/3005:3009,
1/L1/3049:3052		No text annotation
IL_9I78_1211/L1/3012:3017,
1/L1/3042:3046		No text annotation
IL_9I78_1221/L1/3021:3022,
1/L1/3035:3038		No text annotation
IL_9I78_1231/L1/3061:3065,
1/L1/3085:3089		No text annotation
IL_9I78_1241/L1/3118:3120,
1/L1/3225:3227		No text annotation
IL_9I78_1251/L1/3121:3123,
1/L1/3223:3224		No text annotation
IL_9I78_1261/L1/3130:3132,
1/L1/3156:3157		No text annotation
IL_9I78_1271/L1/3133:3141,
1/L1/3150:3155		No text annotation
IL_9I78_1281/L1/3168:3175,
1/L1/3197:3203		No text annotation
IL_9I78_1291/L1/3176:3178,
1/L1/3194:3196		No text annotation
IL_9I78_1301/L1/3241:3244,
1/L1/3252:3255		No text annotation
IL_9I78_1311/L1/3259:3261,
1/L1/3329:3330		No text annotation
IL_9I78_1321/L1/3265:3266,
1/L1/3322:3325		No text annotation
IL_9I78_1331/L1/3269:3271,
1/L1/3314:3319		No text annotation
IL_9I78_1341/L1/3273:3278,
1/L1/3308:3312		No text annotation
IL_9I78_1351/L1/3281:3283,
1/L1/3304:3305		No text annotation
IL_9I78_1361/L1/3283:3286,
1/L1/3301:3304		No text annotation
IL_9I78_1371/L1/3290:3291,
1/L1/3294:3297		No text annotation
IL_9I78_1381/L2/64:66,
1/L2/93:96		No text annotation
IL_9I78_1391/L2/68:69,
1/L2/89:91		No text annotation
IL_9I78_1401/L3/15:16,
1/L3/63:65		Single bulged A
geometric
IL_8OI5_134
IL_14190.2
IL_9I78_1411/L3/21:27,
1/L3/53:58		No text annotation
geometric
IL_8QYX_166
IL_41504.1
IL_9I78_1421/L3/28:29,
1/L3/48:52		C-loop
geometric
IL_4LFB_015
IL_26900.1
IL_9I78_1431/L3/32:36,
1/L3/41:45		Symmetric double minor groove platform
homologous
IL_4V9F_104
IL_58103.12
IL_9I78_1441/L3/72:79,
1/L3/99:105		No text annotation
geometric
IL_8QYX_169
IL_62167.3
IL_9I78_1451/L3/83:86,
1/L3/93:95		No text annotation
geometric
IL_9AXU_130
IL_01003.3

Problematic loops

#loop idProblemSequence
IL_9I78_033No text annotation
IL_9I78_047No text annotation
IL_9I78_058No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9I78_0011/L1/114:124,
1/L1/145:154,
1/L1/256:260		No text annotation
J3_9I78_0021/L1/114:125,
1/L1/140:154,
1/L1/256:260		No text annotation
J3_9I78_0031/L1/180:183,
1/L1/199:208,
1/L1/220:225		No text annotation
J3_9I78_0041/L1/333:349,
1/L1/356:361,
1/L2/21:24		No text annotation
J3_9I78_0051/L1/362:369,
1/L1/396:397,
1/L2/19:20		No text annotation
J3_9I78_0061/L1/362:372,
1/L1/383:397,
1/L2/19:20		No text annotation
J3_9I78_0071/L1/428:434,
1/L1/484:486,
1/L1/606:612		No text annotation
J3_9I78_0081/L1/493:494,
1/L1/579:588,
1/L1/594:599		No text annotation
J3_9I78_0091/L1/796:802,
1/L1/887:889,
1/L1/905:908		No text annotation
J3_9I78_0101/L1/810:813,
1/L1/845:849,
1/L1/874:879		No text annotation
J3_9I78_0111/L1/968:969,
1/L1/1045:1049,
1/L1/1075:1081		No text annotation
J3_9I78_0131/L1/1462:1468,
1/L1/1837:1839,
1/L1/1851:1854		No text annotation
J3_9I78_0141/L1/1471:1474,
1/L1/1817:1823,
1/L1/1832:1834		No text annotation
J3_9I78_0151/L1/1509:1514,
1/L1/1571:1575,
1/L1/1592:1593		No text annotation
J3_9I78_0161/L1/1521:1525,
1/L1/1534:1543,
1/L1/1558:1563		No text annotation
J3_9I78_0171/L1/1604:1612,
1/L1/1621:1625,
1/L1/1790:1800		No text annotation
J3_9I78_0181/L1/1634:1638,
1/L1/1771:1772,
1/L1/1776:1781		No text annotation
J3_9I78_0191/L1/2395:2398,
1/L1/2475:2479,
1/L1/2550:2556		No text annotation
J3_9I78_0201/L1/2492:2495,
1/L1/2508:2523,
1/L1/2537:2540		No text annotation
J3_9I78_0211/L1/2610:2612,
1/L1/2713:2724,
1/L1/2752:2757		No text annotation
J3_9I78_0221/L1/2623:2625,
1/L1/2649:2651,
1/L1/2660:2665		No text annotation
J3_9I78_0231/L1/2845:2848,
1/L1/2873:2875,
1/L1/2889:2895		No text annotation
J3_9I78_0241/L1/3125:3130,
1/L1/3157:3165,
1/L1/3206:3221		No text annotation
J3_9I78_0251/L1/3239:3240,
1/L1/3256:3259,
1/L1/3330:3333		No text annotation
J3_9I78_0261/L2/44:45,
1/L2/58:64,
1/L2/96:100		No text annotation
J3_9I78_0271/L3/9:14,
1/L3/66:67,
1/L3/110:111		No text annotation
geometric
J3_9AXU_026
J3_26985.1
J4_9I78_0011/L1/113:114,
1/L1/260:265,
1/L1/286:292,
1/L1/309:312		No text annotation
J4_9I78_0021/L1/180:183,
1/L1/199:202,
1/L1/206:208,
1/L1/220:225		No text annotation
J4_9I78_0031/L1/1434:1440,
1/L1/1458:1459,
1/L1/1857:1860,
1/L1/2315:2316		No text annotation
J4_9I78_0041/L1/1475:1479,
1/L1/1503:1508,
1/L1/1594:1595,
1/L1/1809:1816		No text annotation
J4_9I78_0051/L1/1478:1479,
1/L1/1503:1508,
1/L1/1594:1595,
1/L1/1809:1815		No text annotation
J4_9I78_0061/L1/1654:1655,
1/L1/1673:1674,
1/L1/1732:1733,
1/L1/1752:1753		No text annotation
J4_9I78_0071/L1/2093:2097,
1/L1/2109:2113,
1/L1/2149:2153,
1/L1/2280:2285		No text annotation
J4_9I78_0081/L1/2155:2157,
1/L1/2211:2212,
1/L1/2230:2239,
1/L1/2273:2278		No text annotation
J4_9I78_0091/L1/2613:2617,
1/L1/2671:2673,
1/L1/2700:2702,
1/L1/2709:2712		No text annotation
J4_9I78_0101/L1/2967:2970,
1/L1/3000:3001,
1/L1/3056:3058,
1/L1/3092:3095		No text annotation
J5_9I78_0011/L1/21:23,
1/L2/35:42,
1/L2/102:107,
1/L2/115:116,
1/L2/137:139		No text annotation
J5_9I78_0021/L1/646:651,
1/L1/781:784,
1/L1/923:927,
1/L1/1357:1359,
1/L1/1414:1420		No text annotation
J5_9I78_0031/L1/663:666,
1/L1/690:694,
1/L1/701:709,
1/L1/731:733,
1/L1/764:769		No text annotation
J5_9I78_0041/L1/1886:1894,
1/L1/1918:1919,
1/L1/2072:2073,
1/L1/2077:2085,
1/L1/2294:2296		No text annotation
J5_9I78_0051/L1/2362:2369,
1/L1/2774:2782,
1/L1/2826:2835,
1/L1/2910:2916,
1/L1/2934:2939		No text annotation
J5_9I78_0061/L1/2379:2382,
1/L1/2570:2573,
1/L1/2586:2587,
1/L1/2609:2610,
1/L1/2757:2763		No text annotation
J6_9I78_0011/L1/23:28,
1/L1/59:69,
1/L1/76:80,
1/L1/107:111,
1/L1/314:324,
1/L2/32:35		No text annotation
J6_9I78_0021/L1/2379:2382,
1/L1/2570:2573,
1/L1/2586:2587,
1/L1/2609:2612,
1/L1/2713:2724,
1/L1/2752:2763		No text annotation
J7_9I78_0011/L1/931:936,
1/L1/949:950,
1/L1/1097:1100,
1/L1/1124:1129,
1/L1/1140:1144,
1/L1/1321:1322,
1/L1/1348:1353		No text annotation

Problematic loops

#loop idProblemSequence
J3_9I78_012No text annotation

Coloring options:
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