HL_9I78_023

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9I78|1|L1|C|941, 9I78|1|L1|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|C|940
9I78|1|L1|C|941
9I78|1|L1|U|942
9I78|1|L1|C|943
9I78|1|L1|A|944
9I78|1|L1|G|945

Current chains

Chain L1

26S rRNA

Nearby chains

Chain La

60S ribosomal protein L28-like protein

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L44-like protein