HL_9I78_026

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|G|1131
9I78|1|L1|G|1132
9I78|1|L1|A|1133
9I78|1|L1|U|1134
9I78|1|L1|G|1135
9I78|1|L1|A|1136
9I78|1|L1|A|1137
9I78|1|L1|C|1138

Current chains

Chain L1

26S rRNA

Nearby chains

Chain L3

5S ribosomal RNA; 5S rRNA

Chain LF

60S ribosomal protein l7-like protein

Chain Le

60S ribosomal protein L32-like protein

Chain Lf

60S ribosomal protein l33-like protein