HL_9I78_029

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAGAAACGAUG

Length

11 nucleotides

Bulged bases

9I78|1|L1|G|1332, 9I78|1|L1|A|1334, 9I78|1|L1|G|1337, 9I78|1|L1|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|U|1330
9I78|1|L1|A|1331
9I78|1|L1|G|1332
9I78|1|L1|A|1333
9I78|1|L1|A|1334
9I78|1|L1|A|1335
9I78|1|L1|C|1336
9I78|1|L1|G|1337
9I78|1|L1|A|1338
9I78|1|L1|U|1339
9I78|1|L1|G|1340

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LF

60S ribosomal protein l7-like protein

Chain LQ

Ribosomal protein L18-like protein

Chain Lq

Putative 60S ribosomal protein