HL_9I78_031

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|A|1445
9I78|1|L1|U|1446
9I78|1|L1|G|1447
9I78|1|L1|A|1448
9I78|1|L1|G|1449
9I78|1|L1|A|1450
9I78|1|L1|A|1451
9I78|1|L1|C|1452
9I78|1|L1|U|1453

Current chains

Chain L1

26S rRNA

Nearby chains

Chain 2

SEC61 beta subunit

Chain 4

CCDC47

Chain LP

60S ribosomal protein l17-like protein

Chain LR

Ribosomal protein L19

Chain Ld

Putative 60S ribosomal protein