HL_9I78_034

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CACUCGUG

Length

8 nucleotides

Bulged bases

9I78|1|L1|C|1549, 9I78|1|L1|G|1552, 9I78|1|L1|U|1553

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|C|1547
9I78|1|L1|A|1548
9I78|1|L1|C|1549
9I78|1|L1|U|1550
9I78|1|L1|C|1551
9I78|1|L1|G|1552
9I78|1|L1|U|1553
9I78|1|L1|G|1554

Current chains

Chain L1

26S rRNA

Nearby chains

Chain L2

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L25-like protein