HL_9I78_037

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

9I78|1|L1|U|1667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|G|1660
9I78|1|L1|U|1661
9I78|1|L1|U|1662
9I78|1|L1|C|1663
9I78|1|L1|U|1664
9I78|1|L1|C|1665
9I78|1|L1|U|1666
9I78|1|L1|U|1667
9I78|1|L1|U|1668

Current chains

Chain L1

26S rRNA

Nearby chains

Chain 2

SEC61 beta subunit

Chain LR

Ribosomal protein L19

Chain LU

60S ribosomal protein L22-like protein

Chain Ld

Putative 60S ribosomal protein