HL_9I78_039

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CACUUCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|C|1739
9I78|1|L1|A|1740
9I78|1|L1|C|1741
9I78|1|L1|U|1742
9I78|1|L1|U|1743
9I78|1|L1|C|1744
9I78|1|L1|U|1745
9I78|1|L1|G|1746

Current chains

Chain L1

26S rRNA

Nearby chains

Chain 1

Translocon Sec61/SecY plug domain-containing protein

Chain 2

SEC61 beta subunit

Chain LR

Ribosomal protein L19

Chain LU

60S ribosomal protein L22-like protein

Chain Lk

60S ribosomal protein L38-like protein