HL_9I78_041

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

9I78|1|L1|C|1826, 9I78|1|L1|G|1828, 9I78|1|L1|A|1830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|C|1824
9I78|1|L1|G|1825
9I78|1|L1|C|1826
9I78|1|L1|A|1827
9I78|1|L1|G|1828
9I78|1|L1|C|1829
9I78|1|L1|A|1830
9I78|1|L1|G|1831

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LP

60S ribosomal protein l17-like protein

Chain Lj

Ribosomal protein L37

Chain Ll

Ribosomal protein eL39