HL_9I78_045

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

9I78|1|L1|A|2101, 9I78|1|L1|A|2102, 9I78|1|L1|U|2103, 9I78|1|L1|A|2107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|U|2098
9I78|1|L1|C|2099
9I78|1|L1|U|2100
9I78|1|L1|A|2101
9I78|1|L1|A|2102
9I78|1|L1|U|2103
9I78|1|L1|U|2104
9I78|1|L1|A|2105
9I78|1|L1|A|2106
9I78|1|L1|A|2107
9I78|1|L1|A|2108

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain Lj

Ribosomal protein L37