HL_9I78_049

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9I78|1|L1|U|2261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|U|2255
9I78|1|L1|C|2256
9I78|1|L1|U|2257
9I78|1|L1|A|2258
9I78|1|L1|A|2259
9I78|1|L1|U|2260
9I78|1|L1|U|2261
9I78|1|L1|A|2262
9I78|1|L1|G|2263

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LV

60S ribosomal protein l23-like protein