HL_9I78_054

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUAAACCAUAACG

Length

13 nucleotides

Bulged bases

9I78|1|L1|A|2596, 9I78|1|L1|C|2603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I78|1|L1|U|2592
9I78|1|L1|U|2593
9I78|1|L1|A|2594
9I78|1|L1|A|2595
9I78|1|L1|A|2596
9I78|1|L1|C|2597
9I78|1|L1|C|2598
9I78|1|L1|A|2599
9I78|1|L1|U|2600
9I78|1|L1|A|2601
9I78|1|L1|A|2602
9I78|1|L1|C|2603
9I78|1|L1|G|2604

Current chains

Chain L1

26S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like protein

Chain LT

60S ribosomal protein l21-like protein

Chain Lb

60S ribosomal protein L29