HL_9I78_075

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGUCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I78_075 not in the Motif Atlas

Homologous match to HL_7A0S_069

Geometric discrepancy: 0.2168

The information below is about HL_7A0S_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59381.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9I78|1|L3|C|36
9I78|1|L3|G|37
9I78|1|L3|U|38
9I78|1|L3|C|39
9I78|1|L3|C|40
9I78|1|L3|G|41

Current chains

Chain L3

5S rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain LD

60S ribosomal protein l5-like protein

Chain LJ

Putative ribosomal protein