HL_9I78_076

3D structure

PDB id

9I78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Chaetomium thermophilum ribosome-bound SND3 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I78_076 not in the Motif Atlas

Homologous match to HL_4V9F_072

Geometric discrepancy: 0.1078

The information below is about HL_4V9F_072

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9I78|1|L3|G|87
9I78|1|L3|G|88
9I78|1|L3|U|89
9I78|1|L3|G|90
9I78|1|L3|A|91
9I78|1|L3|C|92

Current chains

Chain L3

5S rRNA

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain LF

60S ribosomal protein l7-like protein

Chain LI

60S ribosomal protein L10-like protein

Chain LS

60S ribosomal protein L20