HL_9I88_003

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

9I88|1|A|A|124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I88_003 not in the Motif Atlas

Homologous match to HL_7A0S_003

Geometric discrepancy: 0.1441

The information below is about HL_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9I88|1|A|G|122
9I88|1|A|G|123
9I88|1|A|A|124
9I88|1|A|A|125
9I88|1|A|A|126
9I88|1|A|C|127

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL34

Chain W

Large ribosomal subunit protein uL23