Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9I88_0011/A/67:74No text annotation
geometric
HL_4WF9_001
HL_08550.2
HL_9I88_0021/A/87:95Pseudoknot geometry
geometric
HL_4WF9_002
HL_00911.3
HL_9I88_0031/A/122:127No text annotation
homologous
HL_7A0S_003
HL_82710.3
HL_9I88_0041/A/136:143GNRA with tandem sheared
geometric
HL_5AOX_001
HL_98423.4
HL_9I88_0051/A/159:169No text annotation
HL_9I88_0061/A/197:204No text annotation
homologous
HL_7A0S_006
HL_48677.2
HL_9I88_0071/A/228:233No text annotation
homologous
HL_7A0S_007
HL_91813.1
HL_9I88_0081/A/249:255No text annotation
homologous
HL_7A0S_008
HL_76371.3
HL_9I88_0101/A/348:355T-loop with 1 bulged base
homologous
HL_7A0S_010
HL_13999.4
HL_9I88_0111/A/362:366No text annotation
geometric
HL_9H3G_010
HL_75660.9
HL_9I88_0121/A/370:378T-loop with unstacked turn
homologous
HL_7A0S_012
HL_27670.5
HL_9I88_0131/A/428:438No text annotation
homologous
HL_7A0S_013
HL_91503.8
HL_9I88_0141/A/456:463Pseudoknot geometry
homologous
HL_7A0S_014
HL_30680.5
HL_9I88_0151/A/508:513GNRA
homologous
HL_7A0S_015
HL_34789.5
HL_9I88_0161/A/533:538GNRA
homologous
HL_7A0S_016
HL_34789.5
HL_9I88_0171/A/587:594No text annotation
geometric
HL_4WF9_017
HL_50318.1
HL_9I88_0181/A/609:618T-loop with 2 stacked bulged bases
homologous
HL_7A0S_018
HL_33597.5
HL_9I88_0191/A/655:661No text annotation
geometric
HL_8B0X_024
HL_34789.5
HL_9I88_0201/A/674:679GNRA
homologous
HL_7A0S_020
HL_34789.5
HL_9I88_0211/A/686:692GNRA
geometric
HL_9DFE_019
HL_34789.5
HL_9I88_0221/A/757:764No text annotation
geometric
HL_8B0X_052
HL_98423.4
HL_9I88_0231/A/789:798No text annotation
homologous
HL_7A0S_022
HL_50204.2
HL_9I88_0241/A/824:830No text annotation
geometric
HL_8B0X_054
HL_79773.1
HL_9I88_0251/A/871:876No text annotation
homologous
HL_7A0S_024
HL_27530.2
HL_9I88_0261/A/999:1006GNRA
homologous
HL_7A0S_026
HL_34789.5
HL_9I88_0271/A/1022:1029No text annotation
homologous
HL_7A0S_027
HL_47171.2
HL_9I88_0311/A/1260:1265GNRA
homologous
HL_7A0S_031
HL_34789.5
HL_9I88_0321/A/1318:1326T-loop with 2 stacked bulged bases
homologous
HL_7A0S_032
HL_33597.5
HL_9I88_0331/A/1361:1367Pseudoknot geometry with 3' bulge
homologous
HL_7A0S_033
HL_49081.1
HL_9I88_0341/A/1400:1405GNRA variation
homologous
HL_7A0S_034
HL_34789.5
HL_9I88_0351/A/1426:1435No text annotation
homologous
HL_7A0S_035
HL_77449.2
HL_9I88_0361/A/1495:1505No text annotation
HL_9I88_0371/A/1535:1541No text annotation
homologous
HL_7A0S_037
HL_39243.1
HL_9I88_0391/A/1612:1615Mini UNCG
homologous
HL_7A0S_039
HL_90436.4
HL_9I88_0401/A/1656:1663No text annotation
homologous
HL_7A0S_040
HL_28592.3
HL_9I88_0411/A/1673:1681GNRA with extra cWW
geometric
HL_4WF9_039
HL_87268.3
HL_9I88_0421/A/1735:1740UNCG
homologous
HL_7A0S_042
HL_61337.5
HL_9I88_0431/A/1762:1767No text annotation
geometric
HL_9NLN_002
HL_34789.5
HL_9I88_0441/A/1779:1783No text annotation
homologous
HL_7A0S_044
HL_80709.5
HL_9I88_0451/A/1804:1814No text annotation
geometric
HL_8B0X_073
HL_87681.2
HL_9I88_0461/A/1833:1838GNRA
homologous
HL_7A0S_046
HL_93535.3
HL_9I88_0471/A/1895:1900No text annotation
HL_9I88_0481/A/1937:1947No text annotation
geometric
HL_9H3G_052
HL_82185.2
HL_9I88_0491/A/1976:1984No text annotation
homologous
HL_7A0S_048
HL_33350.1
HL_9I88_0501/A/2054:2063No text annotation
homologous
HL_7A0S_049
HL_78372.2
HL_9I88_0511/A/2236:2242No text annotation
HL_9I88_0521/A/2275:2283LSU P loop
homologous
HL_7A0S_052
HL_11974.3
HL_9I88_0531/A/2291:2303No text annotation
homologous
HL_7A0S_053
HL_02042.2
HL_9I88_0541/A/2331:2339No text annotation
HL_9I88_0551/A/2351:2358Pseudoknot geometry
homologous
HL_7A0S_055
HL_52651.3
HL_9I88_0561/A/2382:2389GNRA with extra cWW
homologous
HL_7A0S_056
HL_87268.3
HL_9I88_0571/A/2401:2406GNRA
homologous
HL_7A0S_057
HL_34789.5
HL_9I88_0581/A/2431:2440No text annotation
homologous
HL_7A0S_058
HL_51853.2
HL_9I88_0591/A/2498:2506No text annotation
homologous
HL_7A0S_059
HL_52011.2
HL_9I88_0601/A/2555:2562GNRA variation
homologous
HL_7A0S_060
HL_46665.3
HL_9I88_0611/A/2578:2584LSU A loop
homologous
HL_7A0S_061
HL_48677.2
HL_9I88_0621/A/2621:2626GNRA
homologous
HL_7A0S_062
HL_34789.5
HL_9I88_0631/A/2685:2690GNRA
homologous
HL_7A0S_063
HL_34789.5
HL_9I88_0641/A/2728:2733Ribsomal LSU H95
homologous
HL_7A0S_064
HL_12125.3
HL_9I88_0651/A/2772:2786No text annotation
homologous
HL_7A0S_065
HL_53269.3
HL_9I88_0661/A/2819:2824No text annotation
HL_9I88_0671/A/2839:2847No text annotation
homologous
HL_7A0S_067
HL_37889.2
HL_9I88_0681/A/2876:2881GNRA
homologous
HL_7A0S_068
HL_34789.5
HL_9I88_0691/B/32:46No text annotation
geometric
HL_9E6Q_068
HL_97756.4
HL_9I88_0701/B/36:42No text annotation
homologous
HL_4V9F_071
HL_59381.3
HL_9I88_0711/B/83:88No text annotation
geometric
HL_8P9A_114
HL_91813.1
HL_9I88_0721/D/13:23tRNA D-loop
homologous
HL_1QF6_001
HL_20490.1
HL_9I88_0731/D/32:40tRNA anticodon loop
homologous
HL_9MTS_102
HL_81376.4
HL_9I88_0741/D/54:62T-loop with 2 stacked bulged bases
homologous
HL_4WJ4_003
HL_33597.5
HL_9I88_0751/a/13:23No text annotation
homologous
HL_6CZR_072
NA
HL_9I88_0761/a/158:163GNRA
homologous
HL_6CZR_074
NA
HL_9I88_0771/a/193:198No text annotation
geometric
HL_4XCO_003
HL_64374.2
HL_9I88_0791/a/267:275GNRA related
homologous
HL_6CZR_077
NA
HL_9I88_0801/a/304:309GNRA
homologous
HL_6CZR_078
NA
HL_9I88_0811/a/328:341No text annotation
homologous
HL_6CZR_079
NA
HL_9I88_0821/a/350:355UNCG
homologous
HL_6CZR_080
NA
HL_9I88_0831/a/387:392GNRA
homologous
HL_6CZR_081
NA
HL_9I88_0841/a/427:432No text annotation
homologous
HL_6CZR_082
NA
HL_9I88_0851/a/470:479No text annotation
geometric
HL_4TUE_223
HL_38491.3
HL_9I88_0861/a/530:535GNRA variation
homologous
HL_6CZR_216
NA
HL_9I88_0871/a/625:631No text annotation
homologous
HL_6CZR_085
NA
HL_9I88_0881/a/697:706No text annotation
homologous
HL_6CZR_086
NA
HL_9I88_0891/a/734:739GNRA
homologous
HL_6CZR_087
NA
HL_9I88_0901/a/794:804No text annotation
homologous
HL_6CZR_088
NA
HL_9I88_0911/a/872:877GNRA
homologous
HL_6CZR_090
NA
HL_9I88_0921/a/907:912GNRA
homologous
HL_6CZR_091
NA
HL_9I88_0931/a/973:982No text annotation
homologous
HL_6CZR_092
NA
HL_9I88_0941/a/1022:1027No text annotation
homologous
HL_6CZR_217
NA
HL_9I88_0951/a/1088:1093GNRA
homologous
HL_6CZR_095
NA
HL_9I88_0961/a/1101:1108T-loop related
homologous
HL_6CZR_096
NA
HL_9I88_0971/a/1145:1152No text annotation
HL_9I88_0981/a/1176:1182GNRA
homologous
HL_6CZR_098
NA
HL_9I88_0991/a/1276:1281No text annotation
homologous
HL_6CZR_099
NA
HL_9I88_1001/a/1325:1334T-loop with 3 stacked bulged bases
homologous
HL_6CZR_100
NA
HL_9I88_1011/a/1367:1377No text annotation
homologous
HL_6CZR_101
NA
HL_9I88_1021/a/1461:1465No text annotation
HL_9I88_1031/a/1527:1532GNRA
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_9I88_009No text annotation
HL_9I88_028No text annotation
HL_9I88_029GNRA with tandem sheared
HL_9I88_030Mini UNCG
HL_9I88_038No text annotation
HL_9I88_078No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9I88_0011/A/24:30,
1/A/555:561
Triple sheared with non-canonical cWW
homologous
IL_7A0S_001
IL_22311.2
IL_9I88_0021/A/36:37,
1/A/488:490
Single bulged A
homologous
IL_7A0S_002
IL_14190.3
IL_9I88_0031/A/43:44,
1/A/480:482
Minor groove platform
homologous
IL_7A0S_003
IL_34520.4
IL_9I88_0041/A/56:76,
1/A/109:113
No text annotation
IL_9I88_0051/A/81:85,
1/A/97:104
Kink-turn
geometric
IL_4WF9_004
IL_71972.2
IL_9I88_0061/A/152:153,
1/A/175:177
Single bulged A
geometric
IL_4WF9_006
IL_14190.3
IL_9I88_0071/A/186:187,
1/A/215:217
Single stack bend
homologous
IL_7A0S_005
IL_15011.4
IL_9I88_0081/A/190:197,
1/A/204:212
9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.2
IL_9I88_0091/A/241:248,
1/A/256:262
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_007
IL_62167.4
IL_9I88_0101/A/305:306,
1/A/409:412
Major groove minor groove platform; mini C-loop
geometric
IL_1S03_007
IL_73108.3
IL_9I88_0111/A/310:316,
1/A/403:405
No text annotation
IL_9I88_0121/A/319:327,
1/A/399:400
No text annotation
IL_9I88_0131/A/336:338,
1/A/386:390
No text annotation
geometric
IL_8B0X_074
IL_76658.1
IL_9I88_0141/A/527:530,
1/A/541:554
No text annotation
geometric
IL_4WF9_015
IL_44923.2
IL_9I88_0151/A/581:584,
1/A/597:600
Double sheared
geometric
IL_4WF9_016
IL_58355.3
IL_9I88_0161/A/607:609,
1/A/618:620
Isolated non-canonical cWW pair
homologous
IL_7A0S_011
IL_71625.4
IL_9I88_0171/A/638:640,
1/A/705:707
Isolated non-canonical cWW pair
geometric
IL_4WF9_018
IL_71625.4
IL_9I88_0181/A/649:653,
1/A/663:667
AAA cross-strand stack
homologous
IL_7A0S_013
IL_66798.3
IL_9I88_0191/A/717:719,
1/A/851:853
Isolated non-canonical cWW pair
homologous
IL_7A0S_014
IL_01003.5
IL_9I88_0201/A/719:723,
1/A/844:851
tHW-tHW cross-strand stack
homologous
IL_7A0S_015
IL_73855.2
IL_9I88_0211/A/742:743,
1/A/808:810
Single bulged A
homologous
IL_7A0S_016
IL_14190.3
IL_9I88_0221/A/747:748,
1/A/773:775
Single bulged G
homologous
IL_7A0S_017
IL_28408.3
IL_9I88_0231/A/748:752,
1/A/769:773
No text annotation
geometric
IL_8B0X_083
IL_15190.3
IL_9I88_0241/A/783:785,
1/A/802:803
Major groove platform
geometric
IL_4WF9_026
IL_48076.9
IL_9I88_0251/A/820:822,
1/A/832:836
No text annotation
geometric
IL_8B0X_085
IL_89509.2
IL_9I88_0261/A/882:883,
1/A/984:986
Single stack bend
homologous
IL_7A0S_022
IL_15011.4
IL_9I88_0271/A/889:893,
1/A/975:978
No text annotation
geometric
IL_4WF9_029
IL_01742.1
IL_9I88_0281/A/897:898,
1/A/969:971
No text annotation
geometric
IL_9H3G_147
IL_97561.6
IL_9I88_0291/A/901:907,
1/A/960:966
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_4WF9_031
IL_94128.2
IL_9I88_0301/A/907:908,
1/A/958:960
Minor groove platform
homologous
IL_7A0S_028
IL_34520.4
IL_9I88_0311/A/909:913,
1/A/954:957
C-loop
homologous
IL_7A0S_029
IL_16301.2
IL_9I88_0331/A/1038:1040,
1/A/1203:1204
Single bulged C
homologous
IL_7A0S_032
IL_05642.4
IL_9I88_0341/A/1042:1046,
1/A/1197:1201
UAA/GAN
homologous
IL_7A0S_033
IL_08938.2
IL_9I88_0351/A/1048:1055,
1/A/1194:1195
SSU/LSU pseudoknot
homologous
IL_7A0S_034
IL_46868.1
IL_9I88_0361/A/1055:1057,
1/A/1193:1194
Single bulged U
homologous
IL_7A0S_035
IL_97561.6
IL_9I88_0371/A/1062:1068,
1/A/1184:1188
Kink-turn related
homologous
IL_7A0S_036
IL_57188.6
IL_9I88_0381/A/1068:1074,
1/A/1168:1184
No text annotation
geometric
IL_8B0X_101
IL_50715.4
IL_9I88_0391/A/1075:1078,
1/A/1165:1167
Isolated non-canonical cWW pair
homologous
IL_7A0S_038
IL_76400.2
IL_9I88_0401/A/1081:1083,
1/A/1160:1162
No text annotation
geometric
IL_9E6Q_036
IL_01003.5
IL_9I88_0411/A/1087:1095,
1/A/1152:1156
Kink-turn
geometric
IL_4V9F_042
IL_99692.3
IL_9I88_0441/A/1235:1237,
1/A/1285:1288
Isolated cWS basepair
homologous
IL_7A0S_041
IL_42997.6
IL_9I88_0451/A/1243:1245,
1/A/1277:1279
Isolated non-canonical cWW pair
homologous
IL_7A0S_042
IL_01003.5
IL_9I88_0461/A/1246:1253,
1/A/1272:1276
Kink-turn
homologous
IL_7A0S_043
IL_90775.2
IL_9I88_0471/A/1257:1259,
1/A/1266:1268
Intercalated cWW
homologous
IL_7A0S_044
IL_53541.1
IL_9I88_0481/A/1300:1307,
1/A/2038:2044
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_045
IL_62167.4
IL_9I88_0491/A/1347:1350,
1/A/1647:1648
No text annotation
geometric
IL_9H3G_197
IL_74641.3
IL_9I88_0501/A/1356:1360,
1/A/1368:1370
C-loop
homologous
IL_7A0S_047
IL_06671.2
IL_9I88_0511/A/1388:1392,
1/A/1413:1417
UAA/GAN
homologous
IL_7A0S_048
IL_89021.4
IL_9I88_0521/A/1394:1398,
1/A/1407:1411
tSH-tWH-tHS
homologous
IL_7A0S_049
IL_05821.2
IL_9I88_0531/A/1448:1451,
1/A/1632:1635
No text annotation
geometric
IL_9H3G_238
IL_58355.3
IL_9I88_0541/A/1452:1460,
1/A/1628:1631
No text annotation
IL_9I88_0551/A/1461:1465,
1/A/1624:1627
No text annotation
geometric
IL_9E6Q_057
IL_74317.1
IL_9I88_0561/A/1476:1479,
1/A/1604:1608
No text annotation
IL_9I88_0571/A/1481:1484,
1/A/1598:1602
tSH-tHW
homologous
IL_7A0S_053
IL_74317.1
IL_9I88_0581/A/1512:1515,
1/A/1565:1569
No text annotation
geometric
IL_8B0X_118
IL_68574.5
IL_9I88_0591/A/1519:1522,
1/A/1558:1561
Double sheared
geometric
IL_4LFB_060
IL_58355.3
IL_9I88_0601/A/1525:1526,
1/A/1549:1555
No text annotation
geometric
IL_9DFE_060
IL_46086.1
IL_9I88_0611/A/1532:1534,
1/A/1542:1543
No text annotation
geometric
IL_8B0X_121
IL_14190.3
IL_9I88_0621/A/1695:1700,
1/A/2031:2033
No text annotation
homologous
IL_7A0S_059
IL_12566.5
IL_9I88_0631/A/1707:1709,
1/A/2022:2024
Isolated tWW turn
homologous
IL_7A0S_060
IL_10432.2
IL_9I88_0641/A/1710:1713,
1/A/2020:2021
No text annotation
geometric
IL_9E6Q_063
IL_74641.3
IL_9I88_0651/A/1710:1718,
1/A/2017:2021
No text annotation
geometric
IL_8B0X_180
IL_80252.2
IL_9I88_0661/A/1713:1718,
1/A/2017:2020
Intercalated tWH
homologous
IL_7A0S_062
IL_28217.2
IL_9I88_0671/A/1730:1735,
1/A/1740:1746
tSH-tSH-tHH-tHS
homologous
IL_7A0S_063
IL_20700.2
IL_9I88_0681/A/1757:1759,
1/A/1770:1772
Isolated cWH basepair
geometric
IL_4KQ0_005
IL_10892.3
IL_9I88_0691/A/1797:1798,
1/A/2007:2009
Single bulged A
homologous
IL_7A0S_064
IL_14190.3
IL_9I88_0701/A/1825:1831,
1/A/1840:1848
Kink-turn related
homologous
IL_7A0S_065
IL_17069.6
IL_9I88_0711/A/1864:1867,
1/A/1929:1930
Minor groove platform, major groove intercalation
homologous
IL_7A0S_066
IL_55206.2
IL_9I88_0721/A/1868:1869,
1/A/1925:1928
Major groove intercalation
homologous
IL_7A0S_067
IL_77710.2
IL_9I88_0731/A/1873:1876,
1/A/1920:1921
Major groove minor groove platform; mini C-loop
homologous
IL_7A0S_068
IL_73108.3
IL_9I88_0741/A/1878:1882,
1/A/1914:1918
UAA/GAN with extra stack
homologous
IL_7A0S_069
IL_89021.4
IL_9I88_0751/A/1883:1887,
1/A/1909:1913
Triple sheared
homologous
IL_7A0S_070
IL_15190.3
IL_9I88_0761/A/1891:1894,
1/A/1901:1905
No text annotation
geometric
IL_8B0X_136
IL_77691.7
IL_9I88_0771/A/1960:1961,
1/A/1991:1994
No text annotation
geometric
IL_8B0X_137
IL_24886.3
IL_9I88_0781/A/1961:1972,
1/A/1988:1991
No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_9I88_0791/A/2077:2079,
1/A/2644:2645
Major groove platform
homologous
IL_7A0S_073
IL_48076.9
IL_9I88_0801/A/2081:2083,
1/A/2639:2642
No text annotation
geometric
IL_8B0X_140
IL_80025.2
IL_9I88_0811/A/2094:2096,
1/A/2469:2470
Single bulged U
homologous
IL_7A0S_075
IL_97561.6
IL_9I88_0821/A/2097:2098,
1/A/2465:2468
Minor groove platform
homologous
IL_7A0S_076
IL_34520.4
IL_9I88_0831/A/2108:2110,
1/A/2263:2266
Isolated tHS basepair with bulges
homologous
IL_7A0S_077
IL_87316.3
IL_9I88_0841/A/2123:2125,
1/A/2218:2220
No text annotation
geometric
IL_8OI5_023
IL_01003.5
IL_9I88_0851/A/2229:2231,
1/A/2247:2248
Single bulged G
geometric
IL_6TFF_002
IL_28408.3
IL_9I88_0861/A/2324:2326,
1/A/2344:2348
Isolated tHS basepair with bulges
homologous
IL_7A0S_080
IL_14250.2
IL_9I88_0871/A/2377:2380,
1/A/2391:2394
Double sheared
homologous
IL_7A0S_081
IL_58355.3
IL_9I88_0881/A/2428:2430,
1/A/2441:2442
No text annotation
geometric
IL_8B0X_149
IL_97561.6
IL_9I88_0891/A/2480:2481,
1/A/2525:2527
Single stack bend
homologous
IL_7A0S_083
IL_15011.4
IL_9I88_0901/A/2481:2482,
1/A/2523:2525
Major groove platform
homologous
IL_7A0S_084
IL_48076.9
IL_9I88_0911/A/2484:2486,
1/A/2520:2521
Major groove platform
homologous
IL_7A0S_085
IL_48076.9
IL_9I88_0921/A/2486:2488,
1/A/2516:2520
Major groove minor groove platform with extra cWW
homologous
IL_7A0S_086
IL_36931.3
IL_9I88_0931/A/2493:2497,
1/A/2507:2511
Double sheared with non-canonical cWW
homologous
IL_7A0S_087
IL_87767.3
IL_9I88_0941/A/2534:2535,
1/A/2607:2609
Major groove platform
homologous
IL_7A0S_088
IL_46637.3
IL_9I88_0951/A/2537:2539,
1/A/2601:2605
Isolated non-canonical cWW with bulges
homologous
IL_7A0S_089
IL_68118.5
IL_9I88_0961/A/2539:2540,
1/A/2598:2601
Multiple bulged bases
homologous
IL_7A0S_090
IL_44609.3
IL_9I88_0971/A/2549:2550,
1/A/2567:2570
Major groove platform with intercalation
homologous
IL_7A0S_091
IL_94991.2
IL_9I88_0981/A/2618:2619,
1/A/2628:2630
No text annotation
geometric
IL_8GLP_154
IL_14190.3
IL_9I88_0991/A/2663:2667,
1/A/2801:2809
tSH-tHS-tHW
homologous
IL_7A0S_093
IL_04638.4
IL_9I88_1001/A/2679:2685,
1/A/2690:2695
Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7A0S_094
IL_16458.6
IL_9I88_1011/A/2707:2711,
1/A/2752:2754
C-loop
homologous
IL_7A0S_095
IL_63596.13
IL_9I88_1021/A/2714:2718,
1/A/2745:2749
UAA/GAN related, with intercalation
homologous
IL_7A0S_096
IL_82016.1
IL_9I88_1031/A/2722:2723,
1/A/2738:2741
Multiple bulged bases
homologous
IL_7A0S_097
IL_44609.3
IL_9I88_1041/A/2764:2769,
1/A/2789:2794
UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_91079.1
IL_9I88_1051/A/2858:2859,
1/A/2898:2900
Major groove intercalation
homologous
IL_7A0S_099
IL_28408.3
IL_9I88_1061/A/2863:2865,
1/A/2891:2894
Decoding loop related
homologous
IL_7A0S_100
IL_05502.1
IL_9I88_1071/A/2867:2872,
1/A/2885:2889
No text annotation
homologous
IL_7A0S_101
IL_48489.2
IL_9I88_1081/B/15:16,
1/B/63:65
Major groove intercalation
homologous
IL_4V9F_101
IL_14190.3
IL_9I88_1091/B/21:27,
1/B/53:58
No text annotation
IL_9I88_1101/B/28:29,
1/B/49:52
Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_73108.3
IL_9I88_1111/B/32:36,
1/B/42:46
Symmetric double minor groove platform
homologous
IL_4V9F_104
IL_58103.13
IL_9I88_1121/B/69:77,
1/B/94:102
Bacterial 5S Loop E
homologous
IL_7A0S_106
IL_71138.1
IL_9I88_1131/B/78:80,
1/B/91:93
Isolated non-canonical cWW pair
homologous
IL_7A0S_107
IL_71625.4
IL_9I88_1141/a/31:33,
1/a/560:561
Single bulged G
homologous
IL_6CZR_113
NA
IL_9I88_1151/a/45:46,
1/a/404:406
Single bulged A
homologous
IL_6CZR_114
NA
IL_9I88_1161/a/48:53,
1/a/367:369
No text annotation
geometric
IL_8B0X_003
IL_32983.2
IL_9I88_1171/a/55:57,
1/a/364:365
Minor groove platform
homologous
IL_6CZR_116
NA
IL_9I88_1181/a/64:67,
1/a/102:103
Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_9I88_1191/a/68:70,
1/a/99:101
Isolated non-canonical cWW pair
homologous
IL_6CZR_118
NA
IL_9I88_1201/a/128:131,
1/a/239:240
Multiple bulged bases
homologous
IL_6CZR_119
NA
IL_9I88_1211/a/132:136,
1/a/235:238
Minor groove platform related
homologous
IL_6CZR_120
NA
IL_9I88_1221/a/147:153,
1/a/168:175
tWH-tWH-tHW-tHW
homologous
IL_6CZR_121
NA
IL_9I88_1231/a/250:255,
1/a/285:292
Kink-turn with non-sequential stacking
homologous
IL_6CZR_123
NA
IL_9I88_1241/a/257:260,
1/a/282:283
No text annotation
homologous
IL_6CZR_405
NA
IL_9I88_1251/a/300:301,
1/a/312:316
C-loop
homologous
IL_6CZR_125
NA
IL_9I88_1261/a/375:377,
1/a/400:401
Single bulged U
homologous
IL_6CZR_126
NA
IL_9I88_1271/a/379:383,
1/a/397:398
C-loop
homologous
IL_6CZR_127
NA
IL_9I88_1281/a/383:384,
1/a/395:397
Single bulged G
homologous
IL_6CZR_358
NA
IL_9I88_1291/a/417:424,
1/a/435:441
No text annotation
geometric
IL_4LFB_017
IL_62329.1
IL_9I88_1301/a/454:458,
1/a/491:496
6x5 Sarcin-Ricin; G-bulge
homologous
IL_6CZR_130
NA
IL_9I88_1311/a/458:464,
1/a/485:491
No text annotation
IL_9I88_1321/a/512:519,
1/a/548:549
SSU/LSU pseudoknot
homologous
IL_6CZR_132
NA
IL_9I88_1331/a/523:529,
1/a/536:544
Kink-turn related
homologous
IL_6CZR_133
NA
IL_9I88_1341/a/577:583,
1/a/890:891
No text annotation
homologous
IL_6CZR_134
NA
IL_9I88_1351/a/588:592,
1/a/765:769
tSH-tWH-tHS
homologous
IL_6CZR_135
NA
IL_9I88_1361/a/602:604,
1/a/652:653
Major groove platform
homologous
IL_6CZR_407
NA
IL_9I88_1371/a/605:606,
1/a/648:651
Major groove minor groove platform; mini C-loop
homologous
IL_6CZR_137
NA
IL_9I88_1381/a/612:613,
1/a/640:642
No text annotation
IL_9I88_1391/a/613:620,
1/a/636:640
No text annotation
geometric
IL_8B0X_029
IL_04211.1
IL_9I88_1401/a/662:663,
1/a/759:762
No text annotation
geometric
IL_8B0X_030
IL_74641.3
IL_9I88_1411/a/664:666,
1/a/755:758
No text annotation
geometric
IL_8CRE_403
IL_36931.3
IL_9I88_1421/a/670:674,
1/a/748:751
Tandem non-canonical cWW pairs
homologous
IL_6CZR_141
NA
IL_9I88_1431/a/681:685,
1/a/721:725
Triple non-canonical cWW pairs
homologous
IL_6CZR_409
NA
IL_9I88_1441/a/692:696,
1/a/707:714
Kink-turn
geometric
IL_8B0X_034
IL_71972.2
IL_9I88_1451/a/782:787,
1/a/811:813
No text annotation
geometric
IL_8GLP_241
IL_31359.2
IL_9I88_1461/a/787:791,
1/a/807:811
tSH-tWH-tHS
homologous
IL_6CZR_145
NA
IL_9I88_1471/a/897:904,
1/a/915:920
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_6CZR_364
NA
IL_9I88_1481/a/932:933,
1/a/1404:1406
Single bulged A
homologous
IL_6CZR_147
NA
IL_9I88_1491/a/935:937,
1/a/1401:1402
Single bulged G
homologous
IL_6CZR_148
NA
IL_9I88_1501/a/943:945,
1/a/1391:1395
No text annotation
homologous
IL_6CZR_410
NA
IL_9I88_1511/a/963:964,
1/a/1237:1239
No text annotation
homologous
IL_6CZR_150
NA
IL_9I88_1521/a/1003:1007,
1/a/1056:1057
No text annotation
geometric
IL_8B0X_042
IL_49794.1
IL_9I88_1541/a/1060:1062,
1/a/1219:1220
No text annotation
homologous
IL_6CZR_152
NA
IL_9I88_1551/a/1064:1068,
1/a/1215:1217
No text annotation
homologous
IL_6CZR_154
NA
IL_9I88_1561/a/1069:1070,
1/a/1210:1214
Minor groove platform
homologous
IL_6CZR_155
NA
IL_9I88_1571/a/1072:1073,
1/a/1206:1208
Single bulged U
homologous
IL_6CZR_156
NA
IL_9I88_1581/a/1073:1075,
1/a/1204:1206
Isolated non-canonical cWW pair
homologous
IL_6CZR_157
NA
IL_9I88_1591/a/1136:1139,
1/a/1156:1160
Minor groove platform
homologous
IL_6CZR_158
NA
IL_9I88_1601/a/1141:1144,
1/a/1153:1154
No text annotation
geometric
IL_8B0X_051
IL_87975.1
IL_9I88_1611/a/1169:1172,
1/a/1186:1192
No text annotation
geometric
IL_8B0X_052
IL_32376.2
IL_9I88_1621/a/1258:1264,
1/a/1295:1301
No text annotation
homologous
IL_6CZR_160
NA
IL_9I88_1631/a/1266:1269,
1/a/1288:1293
180 degree turn
homologous
IL_6CZR_161
NA
IL_9I88_1641/a/1270:1274,
1/a/1283:1287
No text annotation
geometric
IL_8B0X_055
IL_87767.3
IL_9I88_1651/a/1314:1319,
1/a/1340:1345
No text annotation
homologous
IL_6CZR_164
NA
IL_9I88_1661/a/1410:1412,
1/a/1513:1516
No text annotation
homologous
IL_6CZR_165
NA
IL_9I88_1671/a/1412:1415,
1/a/1509:1513
No text annotation
homologous
IL_6CZR_368
NA
IL_9I88_1681/a/1416:1418,
1/a/1506:1508
No text annotation
geometric
IL_8GLP_276
IL_01003.5
IL_9I88_1691/a/1418:1420,
1/a/1503:1506
No text annotation
IL_9I88_1701/a/1423:1425,
1/a/1498:1500
Isolated non-canonical cWW pair
homologous
IL_6CZR_411
NA
IL_9I88_1711/a/1427:1430,
1/a/1493:1496
Double sheared
homologous
IL_6CZR_169
NA
IL_9I88_1721/a/1435:1438,
1/a/1485:1488
No text annotation
geometric
IL_9H3G_114
IL_15225.3
IL_9I88_1731/a/1441:1446,
1/a/1478:1482
No text annotation
geometric
IL_8B0X_062
IL_47352.3
IL_9I88_1741/a/1446:1448,
1/a/1476:1478
Isolated non-canonical cWW pair
homologous
IL_6CZR_171
NA
IL_9I88_1751/a/1451:1454,
1/a/1471:1473
No text annotation
geometric
IL_9DFE_082
IL_87316.3
IL_9I88_1761/a/1456:1459,
1/a/1467:1469
No text annotation
geometric
IL_8B0X_064
IL_05502.1

Problematic loops

#loop idProblemSequence
IL_9I88_032Isolated non-canonical cWW pair
IL_9I88_042No text annotation
IL_9I88_043No text annotation
IL_9I88_153No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9I88_0011/A/30:31,
1/A/520:527,
1/A/554:555
No text annotation
geometric
J3_8B0X_014
J3_68715.2
J3_9I88_0021/A/30:31,
1/A/520:530,
1/A/541:555
No text annotation
homologous
J3_7A0S_015
J3_17917.2
J3_9I88_0031/A/32:35,
1/A/491:507,
1/A/514:519
No text annotation
homologous
J3_7A0S_016
J3_07616.2
J3_9I88_0041/A/56:67,
1/A/74:76,
1/A/109:113
No text annotation
geometric
J3_4WF9_001
J3_47707.1
J3_9I88_0051/A/272:276,
1/A/295:302,
1/A/415:416
No text annotation
homologous
J3_7A0S_003
J3_97971.2
J3_9I88_0061/A/340:344,
1/A/359:368,
1/A/380:384
No text annotation
geometric
J3_9DFE_006
J3_77124.1
J3_9I88_0071/A/728:734,
1/A/818:820,
1/A/836:839
No text annotation
homologous
J3_7A0S_004
J3_46658.2
J3_9I88_0081/A/743:745,
1/A/777:781,
1/A/805:808
No text annotation
homologous
J3_7A0S_005
J3_69816.2
J3_9I88_0101/A/1335:1340,
1/A/1669:1671,
1/A/1683:1686
No text annotation
homologous
J3_7A0S_006
J3_32852.7
J3_9I88_0111/A/1342:1346,
1/A/1649:1655,
1/A/1664:1667
No text annotation
geometric
J3_4WF9_005
J3_68164.1
J3_9I88_0121/A/1381:1387,
1/A/1418:1422,
1/A/1439:1440
No text annotation
homologous
J3_7A0S_018
J3_94309.2
J3_9I88_0131/A/1468:1473,
1/A/1611:1612,
1/A/1615:1621
No text annotation
homologous
J3_7A0S_019
J3_34864.3
J3_9I88_0141/A/2118:2120,
1/A/2223:2228,
1/A/2249:2255
No text annotation
geometric
J3_4WF9_007
J3_07703.1
J3_9I88_0151/A/2309:2311,
1/A/2411:2422,
1/A/2448:2454
No text annotation
homologous
J3_7A0S_020
J3_04772.2
J3_9I88_0161/A/2322:2324,
1/A/2348:2350,
1/A/2359:2364
No text annotation
homologous
J3_7A0S_010
J3_05327.2
J3_9I88_0171/A/2544:2547,
1/A/2572:2574,
1/A/2588:2594
No text annotation
homologous
J3_7A0S_011
J3_32601.6
J3_9I88_0181/A/2816:2817,
1/A/2826:2831,
1/A/2909:2913
No text annotation
geometric
J3_9DFE_018
J3_24127.1
J3_9I88_0191/A/2834:2835,
1/A/2851:2856,
1/A/2902:2906
No text annotation
homologous
J3_7A0S_013
J3_76911.2
J3_9I88_0201/B/9:14,
1/B/66:68,
1/B/103:106
No text annotation
J3_9I88_0211/a/47:48,
1/a/369:375,
1/a/401:403
No text annotation
geometric
J3_8B0X_001
J3_58657.2
J3_9I88_0221/a/47:53,
1/a/367:375,
1/a/401:403
No text annotation
homologous
J3_6CZR_058
NA
J3_9I88_0231/a/594:596,
1/a/659:662,
1/a/762:763
No text annotation
geometric
J3_8B0X_002
J3_01633.2
J3_9I88_0241/a/594:596,
1/a/659:663,
1/a/759:763
No text annotation
homologous
J3_6CZR_077
NA
J3_9I88_0251/a/680:681,
1/a/725:733,
1/a/740:742
No text annotation
homologous
J3_6CZR_017
NA
J3_9I88_0261/a/834:837,
1/a/867:871,
1/a/878:884
No text annotation
homologous
J3_6CZR_018
NA
J3_9I88_0271/a/946:949,
1/a/1355:1361,
1/a/1383:1390
No text annotation
homologous
J3_6CZR_061
NA
J3_9I88_0281/a/953:956,
1/a/1246:1248,
1/a/1348:1351
No text annotation
homologous
J3_6CZR_019
NA
J3_9I88_0291/a/965:972,
1/a/983:994,
1/a/1232:1236
No text annotation
geometric
J3_8B0X_007
J3_88451.2
J3_9I88_0301/a/1000:1003,
1/a/1057:1059,
1/a/1221:1226
No text annotation
geometric
J3_8B0X_008
J3_84394.1
J3_9I88_0311/a/1000:1007,
1/a/1056:1059,
1/a/1221:1226
No text annotation
homologous
J3_6CZR_063
NA
J3_9I88_0321/a/1075:1080,
1/a/1119:1125,
1/a/1198:1204
No text annotation
homologous
J3_6CZR_023
NA
J3_9I88_0331/a/1085:1086,
1/a/1095:1098,
1/a/1111:1114
No text annotation
homologous
J3_6CZR_079
NA
J3_9I88_0341/a/1128:1130,
1/a/1166:1169,
1/a/1192:1195
No text annotation
geometric
J3_8B0X_012
J3_82365.6
J3_9I88_0351/a/1128:1130,
1/a/1166:1172,
1/a/1186:1195
No text annotation
homologous
J3_6CZR_025
NA
J3_9I88_0361/a/1248:1252,
1/a/1307:1314,
1/a/1345:1348
No text annotation
homologous
J3_6CZR_026
NA
J4_9I88_0011/A/271:272,
1/A/416:421,
1/A/445:452,
1/A/467:470
No text annotation
homologous
J4_7A0S_001
J4_94698.2
J4_9I88_0021/A/340:344,
1/A/359:362,
1/A/366:368,
1/A/380:384
No text annotation
homologous
J4_7A0S_002
J4_16174.1
J4_9I88_0031/A/644:647,
1/A/669:673,
1/A/680:683,
1/A/695:701
No text annotation
J4_9I88_0041/A/1308:1313,
1/A/1331:1332,
1/A/1689:1692,
1/A/2036:2037
No text annotation
homologous
J4_7A0S_004
J4_64571.6
J4_9I88_0051/A/1347:1351,
1/A/1375:1380,
1/A/1441:1442,
1/A/1641:1648
No text annotation
J4_9I88_0061/A/1350:1351,
1/A/1375:1380,
1/A/1441:1442,
1/A/1641:1647
No text annotation
homologous
J4_7A0S_006
J4_48150.2
J4_9I88_0071/A/1488:1490,
1/A/1510:1511,
1/A/1570:1574,
1/A/1590:1594
No text annotation
J4_9I88_0081/A/1799:1803,
1/A/1815:1819,
1/A/1854:1857,
1/A/2002:2006
No text annotation
homologous
J4_7A0S_008
J4_61477.6
J4_9I88_0091/A/1860:1862,
1/A/1932:1933,
1/A/1951:1960,
1/A/1994:1999
No text annotation
J4_9I88_0101/A/2312:2316,
1/A/2370:2374,
1/A/2397:2399,
1/A/2408:2410
No text annotation
homologous
J4_7A0S_009
J4_98139.1
J4_9I88_0111/A/2670:2673,
1/A/2701:2703,
1/A/2758:2762,
1/A/2796:2798
No text annotation
J4_9I88_0121/D/7:10,
1/D/26:28,
1/D/44:50,
1/D/66:67
tRNA junction
homologous
J4_6CFJ_015
J4_95067.2
J4_9I88_0131/a/114:122,
1/a/246:248,
1/a/294:297,
1/a/319:320
No text annotation
J4_9I88_0141/a/142:144,
1/a/178:186,
1/a/205:213,
1/a/227:229
No text annotation
J4_9I88_0151/a/583:585,
1/a/772:777,
1/a/818:829,
1/a/889:890
No text annotation
homologous
J4_6CZR_013
NA
J5_9I88_0011/A/47:54,
1/A/115:120,
1/A/129:130,
1/A/149:151,
1/A/178:180
No text annotation
J5_9I88_0021/A/271:276,
1/A/295:302,
1/A/415:421,
1/A/445:452,
1/A/467:470
No text annotation
J5_9I88_0031/A/576:578,
1/A/603:607,
1/A/620:622,
1/A/1299:1300,
1/A/2044:2045
No text annotation
homologous
J5_7A0S_003
J5_43153.6
J5_9I88_0041/A/627:632,
1/A/713:716,
1/A/854:857,
1/A/1234:1235,
1/A/1288:1294
No text annotation
J5_9I88_0051/A/1718:1726,
1/A/1750:1751,
1/A/1778:1779,
1/A/1783:1791,
1/A/2015:2017
No text annotation
homologous
J5_7A0S_005
J5_99177.2
J5_9I88_0061/A/2084:2091,
1/A/2473:2480,
1/A/2527:2534,
1/A/2609:2615,
1/A/2633:2638
No text annotation
J5_9I88_0071/A/2101:2104,
1/A/2270:2273,
1/A/2285:2286,
1/A/2308:2309,
1/A/2454:2462
No text annotation
homologous
J5_7A0S_007
J5_39529.2
J5_9I88_0081/a/37:40,
1/a/411:414,
1/a/444:449,
1/a/501:508,
1/a/553:556
No text annotation
J5_9I88_0091/a/59:62,
1/a/105:112,
1/a/322:324,
1/a/345:347,
1/a/358:362
No text annotation
homologous
J5_6CZR_021
NA
J6_9I88_0011/A/45:46,
1/A/181:186,
1/A/217:227,
1/A/234:238,
1/A/265:269,
1/A/472:479
No text annotation
J6_9I88_0021/A/2101:2104,
1/A/2270:2273,
1/A/2285:2286,
1/A/2308:2311,
1/A/2411:2422,
1/A/2448:2462
No text annotation
J7_9I88_0011/A/8:15,
1/A/570:576,
1/A/2045:2050,
1/A/2067:2070,
1/A/2652:2657,
1/A/2815:2816,
1/A/2913:2914
No text annotation
J7_9I88_0021/A/862:867,
1/A/880:881,
1/A/987:990,
1/A/1015:1020,
1/A/1031:1035,
1/A/1207:1208,
1/A/1224:1229
No text annotation

Problematic loops

#loop idProblemSequence
J3_9I88_009No text annotation

Coloring options:
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