HL_9I88_011

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CAAAG

Length

5 nucleotides

Bulged bases

9I88|1|A|A|364, 9I88|1|A|A|365

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I88_011 not in the Motif Atlas

Geometric match to HL_9H3G_010

Geometric discrepancy: 0.07

The information below is about HL_9H3G_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9I88|1|A|C|362
9I88|1|A|A|363
9I88|1|A|A|364
9I88|1|A|A|365
9I88|1|A|G|366

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

Large ribosomal subunit protein uL4

Chain X

Large ribosomal subunit protein uL24