HL_9I88_019

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AGUAAAU

Length

7 nucleotides

Bulged bases

9I88|1|A|A|658

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I88_019 not in the Motif Atlas

Geometric match to HL_8B0X_024

Geometric discrepancy: 0.1262

The information below is about HL_8B0X_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9I88|1|A|A|655
9I88|1|A|G|656
9I88|1|A|U|657
9I88|1|A|A|658
9I88|1|A|A|659
9I88|1|A|A|660
9I88|1|A|U|661

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

Large ribosomal subunit protein uL4