HL_9I88_041

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

9I88|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I88_041 not in the Motif Atlas

Geometric match to HL_4WF9_039

Geometric discrepancy: 0.0816

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9I88|1|A|A|1673
9I88|1|A|U|1674
9I88|1|A|G|1675
9I88|1|A|A|1676
9I88|1|A|G|1677
9I88|1|A|A|1678
9I88|1|A|A|1679
9I88|1|A|U|1680
9I88|1|A|U|1681

Current chains

Chain A

23S ribosomal RNA

Nearby chains