HL_9I88_048
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GUAACUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 9I88|1|A|A|1940
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I88_048 not in the Motif Atlas
- Geometric match to HL_9H3G_052
- Geometric discrepancy: 0.1802
- The information below is about HL_9H3G_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.2
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9I88|1|A|G|1937
9I88|1|A|U|1938
9I88|1|A|A|1939
9I88|1|A|A|1940
9I88|1|A|C|1941
9I88|1|A|U|1942
9I88|1|A|A|1943
9I88|1|A|U|1944
9I88|1|A|A|1945
9I88|1|A|A|1946
9I88|1|A|C|1947
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- Transfer RNA; tRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: