HL_9I88_050
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 9I88|1|A|A|2057, 9I88|1|A|A|2058, 9I88|1|A|G|2059
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I88_050 not in the Motif Atlas
- Homologous match to HL_7A0S_049
- Geometric discrepancy: 0.1969
- The information below is about HL_7A0S_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9I88|1|A|G|2054
9I88|1|A|U|2055
9I88|1|A|G|2056
9I88|1|A|A|2057
9I88|1|A|A|2058
9I88|1|A|G|2059
9I88|1|A|A|2060
9I88|1|A|U|2061
9I88|1|A|G|2062
9I88|1|A|C|2063
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL32
- Chain H
- Large ribosomal subunit protein uL3
- Chain U
- Large ribosomal subunit protein bL21
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