HL_9I88_056

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CCUACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I88_056 not in the Motif Atlas

Homologous match to HL_7A0S_056

Geometric discrepancy: 0.2644

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9I88|1|A|C|2382
9I88|1|A|C|2383
9I88|1|A|U|2384
9I88|1|A|A|2385
9I88|1|A|C|2386
9I88|1|A|A|2387
9I88|1|A|A|2388
9I88|1|A|G|2389

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL35

Chain O

Large ribosomal subunit protein uL15

Chain Z

Large ribosomal subunit protein bL27