HL_9I88_079

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

9I88|1|a|G|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I88_079 not in the Motif Atlas

Homologous match to HL_6CZR_077

Geometric discrepancy: 0.2787

The information below is about HL_6CZR_077

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9I88|1|a|G|267
9I88|1|a|G|268
9I88|1|a|U|269
9I88|1|a|A|270
9I88|1|a|A|271
9I88|1|a|C|272
9I88|1|a|G|273
9I88|1|a|G|274
9I88|1|a|C|275

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain r

Small ribosomal subunit protein uS17

Chain u

Small ribosomal subunit protein bS20