HL_9I88_081
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- AACUGAGACACGGU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I88_081 not in the Motif Atlas
- Homologous match to HL_6CZR_079
- Geometric discrepancy: 0.1414
- The information below is about HL_6CZR_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81205.2
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9I88|1|a|A|328
9I88|1|a|A|329
9I88|1|a|C|330
9I88|1|a|U|331
9I88|1|a|G|332
9I88|1|a|A|333
9I88|1|a|G|334
9I88|1|a|A|335
9I88|1|a|C|336
9I88|1|a|A|337
9I88|1|a|C|338
9I88|1|a|G|339
9I88|1|a|G|340
9I88|1|a|U|341
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain q
- Small ribosomal subunit protein bS16
- Chain u
- Small ribosomal subunit protein bS20
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