HL_9I88_085

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AAGUAACUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I88_085 not in the Motif Atlas

Geometric match to HL_4TUE_223

Geometric discrepancy: 0.3991

The information below is about HL_4TUE_223

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9I88|1|a|A|470
9I88|1|a|A|471
9I88|1|a|G|472
9I88|1|a|U|473
9I88|1|a|A|474
9I88|1|a|A|475
9I88|1|a|C|476
9I88|1|a|U|477
9I88|1|a|G|478
9I88|1|a|U|479

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein bS16