HL_9I89_006

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9I89|1|A|A|199, 9I89|1|A|A|202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_006 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.0831

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9I89|1|A|G|197
9I89|1|A|A|198
9I89|1|A|A|199
9I89|1|A|A|200
9I89|1|A|C|201
9I89|1|A|A|202
9I89|1|A|U|203
9I89|1|A|C|204

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL28

Chain O

Large ribosomal subunit protein uL15