HL_9I89_012

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

9I89|1|A|A|372, 9I89|1|A|A|373, 9I89|1|A|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_012 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3626

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9I89|1|A|G|370
9I89|1|A|U|371
9I89|1|A|A|372
9I89|1|A|A|373
9I89|1|A|U|374
9I89|1|A|A|375
9I89|1|A|A|376
9I89|1|A|U|377
9I89|1|A|C|378

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL24

Chain I

Large ribosomal subunit protein uL4