HL_9I89_055
3D structure
- PDB id
- 9I89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- UGUAAAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I89_055 not in the Motif Atlas
- Homologous match to HL_7A0S_055
- Geometric discrepancy: 0.1734
- The information below is about HL_7A0S_055
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
9I89|1|A|U|2351
9I89|1|A|G|2352
9I89|1|A|U|2353
9I89|1|A|A|2354
9I89|1|A|A|2355
9I89|1|A|A|2356
9I89|1|A|G|2357
9I89|1|A|G|2358
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- Transfer RNA; tRNA
- Chain J
- Large ribosomal subunit protein uL5
- Chain P
- Large ribosomal subunit protein uL16
- Chain Z
- Large ribosomal subunit protein bL27
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