HL_9I89_058

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

9I89|1|A|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_058 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1411

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9I89|1|A|C|2431
9I89|1|A|G|2432
9I89|1|A|C|2433
9I89|1|A|A|2434
9I89|1|A|U|2435
9I89|1|A|G|2436
9I89|1|A|G|2437
9I89|1|A|A|2438
9I89|1|A|A|2439
9I89|1|A|G|2440

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL15