HL_9I89_059

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

AGUUCACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_059 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.2403

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9I89|1|A|A|2498
9I89|1|A|G|2499
9I89|1|A|U|2500
9I89|1|A|U|2501
9I89|1|A|C|2502
9I89|1|A|A|2503
9I89|1|A|C|2504
9I89|1|A|A|2505
9I89|1|A|U|2506

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

Large ribosomal subunit protein bL36

Chain P

Large ribosomal subunit protein uL16