HL_9I89_060

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UGUAGUCG

Length

8 nucleotides

Bulged bases

9I89|1|A|G|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_060 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1173

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9I89|1|A|U|2555
9I89|1|A|G|2556
9I89|1|A|U|2557
9I89|1|A|A|2558
9I89|1|A|G|2559
9I89|1|A|U|2560
9I89|1|A|C|2561
9I89|1|A|G|2562

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

Large ribosomal subunit protein bL36

Chain K

Large ribosomal subunit protein uL6